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DSCR9 (Down syndrome critical region 9 (non-protein coding))

Identity

Alias_symbol (synonym)NCRNA00038
Other alias
HGNC (Hugo) DSCR9
LocusID (NCBI) 257203
Atlas_Id 62654
Location 21q22.13  [Link to chromosome band 21q22]
Location_base_pair Starts at 38592627 and ends at 38594036 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DSCR9 (21q22.13) / RAD21 (8q24.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DSCR9   16301
Cards
Entrez_Gene (NCBI)DSCR9  257203  Down syndrome critical region 9 (non-protein coding)
AliasesNCRNA00038
GeneCards (Weizmann)DSCR9
Ensembl hg19 (Hinxton)ENSG00000230366 [Gene_View]  chr21:38592627-38594036 [Contig_View]  DSCR9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000230366 [Gene_View]  chr21:38592627-38594036 [Contig_View]  DSCR9 [Vega]
ICGC DataPortalENSG00000230366
TCGA cBioPortalDSCR9
AceView (NCBI)DSCR9
Genatlas (Paris)DSCR9
WikiGenes257203
SOURCE (Princeton)DSCR9
Genetics Home Reference (NIH)DSCR9
Genomic and cartography
GoldenPath hg19 (UCSC)DSCR9  -     chr21:38592627-38594036 +  21q22.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DSCR9  -     21q22.13   [Description]    (hg38-Dec_2013)
EnsemblDSCR9 - 21q22.13 [CytoView hg19]  DSCR9 - 21q22.13 [CytoView hg38]
Mapping of homologs : NCBIDSCR9 [Mapview hg19]  DSCR9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB066100 AB212286 AB212287 AB212288 AB212289
RefSeq transcript (Entrez)NM_148675
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929426
Consensus coding sequences : CCDS (NCBI)DSCR9
Cluster EST : UnigeneHs.505159 [ NCBI ]
CGAP (NCI)Hs.505159
Alternative Splicing GalleryENSG00000230366
Gene ExpressionDSCR9 [ NCBI-GEO ]   DSCR9 [ EBI - ARRAY_EXPRESS ]   DSCR9 [ SEEK ]   DSCR9 [ MEM ]
Gene Expression Viewer (FireBrowse)DSCR9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)257203
GTEX Portal (Tissue expression)DSCR9
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59020   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59020  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59020
Splice isoforms : SwissVarP59020
PhosPhoSitePlusP59020
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)DSCR9
DMDM Disease mutations257203
Blocks (Seattle)DSCR9
SuperfamilyP59020
Human Protein AtlasENSG00000230366
Peptide AtlasP59020
HPRD10925
IPIIPI00164926   
Protein Interaction databases
DIP (DOE-UCLA)P59020
IntAct (EBI)P59020
FunCoupENSG00000230366
BioGRIDDSCR9
STRING (EMBL)DSCR9
ZODIACDSCR9
Ontologies - Pathways
QuickGOP59020
Ontology : AmiGOmolecular_function  cellular_component  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  biological_process  
NDEx NetworkDSCR9
Atlas of Cancer Signalling NetworkDSCR9
Wikipedia pathwaysDSCR9
Orthology - Evolution
OrthoDB257203
GeneTree (enSembl)ENSG00000230366
Phylogenetic Trees/Animal Genes : TreeFamDSCR9
HOVERGENP59020
HOGENOMP59020
Homologs : HomoloGeneDSCR9
Homology/Alignments : Family Browser (UCSC)DSCR9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDSCR9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DSCR9
dbVarDSCR9
ClinVarDSCR9
1000_GenomesDSCR9 
Exome Variant ServerDSCR9
ExAC (Exome Aggregation Consortium)DSCR9 (select the gene name)
Genetic variants : HAPMAP257203
Genomic Variants (DGV)DSCR9 [DGVbeta]
DECIPHER (Syndromes)21:38592627-38594036  ENSG00000230366
CONAN: Copy Number AnalysisDSCR9 
Mutations
ICGC Data PortalDSCR9 
TCGA Data PortalDSCR9 
Broad Tumor PortalDSCR9
OASIS PortalDSCR9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDDSCR9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DSCR9
DgiDB (Drug Gene Interaction Database)DSCR9
DoCM (Curated mutations)DSCR9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DSCR9 (select a term)
intoGenDSCR9
Cancer3DDSCR9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDSCR9
Genetic Testing Registry DSCR9
NextProtP59020 [Medical]
TSGene257203
GENETestsDSCR9
Huge Navigator DSCR9 [HugePedia]
snp3D : Map Gene to Disease257203
BioCentury BCIQDSCR9
ClinGenDSCR9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD257203
Chemical/Pharm GKB GenePA38399
Clinical trialDSCR9
Miscellaneous
canSAR (ICR)DSCR9 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDSCR9
EVEXDSCR9
GoPubMedDSCR9
iHOPDSCR9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:02:17 CET 2017

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