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DSEL (dermatan sulfate epimerase-like)

Identity

Alias_namesC18orf4
chromosome 18 open reading frame 4
Alias_symbol (synonym)NCAG1
FLJ11477
Other alias
HGNC (Hugo) DSEL
LocusID (NCBI) 92126
Atlas_Id 62655
Location 18q22.1  [Link to chromosome band 18q22]
Location_base_pair Starts at 65173819 and ends at 65183967 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DSEL   18144
Cards
Entrez_Gene (NCBI)DSEL  92126  dermatan sulfate epimerase-like
AliasesC18orf4
GeneCards (Weizmann)DSEL
Ensembl hg19 (Hinxton)ENSG00000171451 [Gene_View]  chr18:65173819-65183967 [Contig_View]  DSEL [Vega]
Ensembl hg38 (Hinxton)ENSG00000171451 [Gene_View]  chr18:65173819-65183967 [Contig_View]  DSEL [Vega]
ICGC DataPortalENSG00000171451
TCGA cBioPortalDSEL
AceView (NCBI)DSEL
Genatlas (Paris)DSEL
WikiGenes92126
SOURCE (Princeton)DSEL
Genetics Home Reference (NIH)DSEL
Genomic and cartography
GoldenPath hg19 (UCSC)DSEL  -     chr18:65173819-65183967 -  18q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DSEL  -     18q22.1   [Description]    (hg38-Dec_2013)
EnsemblDSEL - 18q22.1 [CytoView hg19]  DSEL - 18q22.1 [CytoView hg38]
Mapping of homologs : NCBIDSEL [Mapview hg19]  DSEL [Mapview hg38]
OMIM611125   
Gene and transcription
Genbank (Entrez)AF480435 AK021539 AK021849 AK023067 AV656576
RefSeq transcript (Entrez)NM_032160
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010966 NW_003315960 NW_004929411
Consensus coding sequences : CCDS (NCBI)DSEL
Cluster EST : UnigeneHs.124673 [ NCBI ]
CGAP (NCI)Hs.124673
Alternative Splicing GalleryENSG00000171451
Gene ExpressionDSEL [ NCBI-GEO ]   DSEL [ EBI - ARRAY_EXPRESS ]   DSEL [ SEEK ]   DSEL [ MEM ]
Gene Expression Viewer (FireBrowse)DSEL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92126
GTEX Portal (Tissue expression)DSEL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZU8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZU8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZU8
Splice isoforms : SwissVarQ8IZU8
Catalytic activity : Enzyme5.1.-.- [ Enzyme-Expasy ]   5.1.-.-5.1.-.- [ IntEnz-EBI ]   5.1.-.- [ BRENDA ]   5.1.-.- [ KEGG ]   
PhosPhoSitePlusQ8IZU8
Domains : Interpro (EBI)P-loop_NTPase    Sulfotransferase_dom   
Domain families : Pfam (Sanger)Sulfotransfer_1 (PF00685)   
Domain families : Pfam (NCBI)pfam00685   
Conserved Domain (NCBI)DSEL
DMDM Disease mutations92126
Blocks (Seattle)DSEL
SuperfamilyQ8IZU8
Human Protein AtlasENSG00000171451
Peptide AtlasQ8IZU8
HPRD10720
IPIIPI01014267   IPI00386945   IPI00218081   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZU8
IntAct (EBI)Q8IZU8
FunCoupENSG00000171451
BioGRIDDSEL
STRING (EMBL)DSEL
ZODIACDSEL
Ontologies - Pathways
QuickGOQ8IZU8
Ontology : AmiGOGolgi membrane  carbohydrate metabolic process  sulfotransferase activity  integral component of membrane  isomerase activity  glycosaminoglycan metabolic process  chondroitin sulfate metabolic process  dermatan sulfate biosynthetic process  small molecule metabolic process  
Ontology : EGO-EBIGolgi membrane  carbohydrate metabolic process  sulfotransferase activity  integral component of membrane  isomerase activity  glycosaminoglycan metabolic process  chondroitin sulfate metabolic process  dermatan sulfate biosynthetic process  small molecule metabolic process  
NDEx NetworkDSEL
Atlas of Cancer Signalling NetworkDSEL
Wikipedia pathwaysDSEL
Orthology - Evolution
OrthoDB92126
GeneTree (enSembl)ENSG00000171451
Phylogenetic Trees/Animal Genes : TreeFamDSEL
HOVERGENQ8IZU8
HOGENOMQ8IZU8
Homologs : HomoloGeneDSEL
Homology/Alignments : Family Browser (UCSC)DSEL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDSEL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DSEL
dbVarDSEL
ClinVarDSEL
1000_GenomesDSEL 
Exome Variant ServerDSEL
ExAC (Exome Aggregation Consortium)DSEL (select the gene name)
Genetic variants : HAPMAP92126
Genomic Variants (DGV)DSEL [DGVbeta]
DECIPHER (Syndromes)18:65173819-65183967  ENSG00000171451
CONAN: Copy Number AnalysisDSEL 
Mutations
ICGC Data PortalDSEL 
TCGA Data PortalDSEL 
Broad Tumor PortalDSEL
OASIS PortalDSEL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDSEL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDSEL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DSEL
DgiDB (Drug Gene Interaction Database)DSEL
DoCM (Curated mutations)DSEL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DSEL (select a term)
intoGenDSEL
Cancer3DDSEL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611125   
Orphanet
MedgenDSEL
Genetic Testing Registry DSEL
NextProtQ8IZU8 [Medical]
TSGene92126
GENETestsDSEL
Huge Navigator DSEL [HugePedia]
snp3D : Map Gene to Disease92126
BioCentury BCIQDSEL
ClinGenDSEL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92126
Chemical/Pharm GKB GenePA162384097
Clinical trialDSEL
Miscellaneous
canSAR (ICR)DSEL (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDSEL
EVEXDSEL
GoPubMedDSEL
iHOPDSEL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:02:17 CET 2017

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