Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DUBR (DPPA2 upstream binding RNA)

Identity

Alias_namesLINC00883
long intergenic non-protein coding RNA 883
Other alias
HGNC (Hugo) DUBR
LocusID (NCBI) 344595
Atlas_Id 77784
Location 3q13.12  [Link to chromosome band 3q13]
Location_base_pair Starts at 106959539 and ends at 106967719 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)DUBR   48569
Cards
Entrez_Gene (NCBI)DUBR  344595  DPPA2 upstream binding RNA
AliasesLINC00883
GeneCards (Weizmann)DUBR
Ensembl hg19 (Hinxton)ENSG00000243701 [Gene_View]  chr3:106959539-106967719 [Contig_View]  DUBR [Vega]
Ensembl hg38 (Hinxton)ENSG00000243701 [Gene_View]  chr3:106959539-106967719 [Contig_View]  DUBR [Vega]
ICGC DataPortalENSG00000243701
TCGA cBioPortalDUBR
AceView (NCBI)DUBR
Genatlas (Paris)DUBR
WikiGenes344595
SOURCE (Princeton)DUBR
Genetics Home Reference (NIH)DUBR
Genomic and cartography
GoldenPath hg19 (UCSC)DUBR  -     chr3:106959539-106967719 +  3q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DUBR  -     3q13.12   [Description]    (hg38-Dec_2013)
EnsemblDUBR - 3q13.12 [CytoView hg19]  DUBR - 3q13.12 [CytoView hg38]
Mapping of homologs : NCBIDUBR [Mapview hg19]  DUBR [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)DUBR
Cluster EST : UnigeneHs.543039 [ NCBI ]
CGAP (NCI)Hs.543039
Alternative Splicing GalleryENSG00000243701
Gene ExpressionDUBR [ NCBI-GEO ]   DUBR [ EBI - ARRAY_EXPRESS ]   DUBR [ SEEK ]   DUBR [ MEM ]
Gene Expression Viewer (FireBrowse)DUBR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)344595
GTEX Portal (Tissue expression)DUBR
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)DUBR
DMDM Disease mutations344595
Blocks (Seattle)DUBR
Human Protein AtlasENSG00000243701
Protein Interaction databases
FunCoupENSG00000243701
BioGRIDDUBR
STRING (EMBL)DUBR
ZODIACDUBR
Ontologies - Pathways
Huge Navigator DUBR [HugePedia]
snp3D : Map Gene to Disease344595
BioCentury BCIQDUBR
ClinGenDUBR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD344595
Clinical trialDUBR
Miscellaneous
canSAR (ICR)DUBR (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDUBR
EVEXDUBR
GoPubMedDUBR
iHOPDUBR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:02:20 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.