Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DUOXA1 (dual oxidase maturation factor 1)

Identity

Alias_symbol (synonym)FLJ32334
NUMBIP
NIP
mol
Other alias
HGNC (Hugo) DUOXA1
LocusID (NCBI) 90527
Atlas_Id 47065
Location 15q21.1  [Link to chromosome band 15q21]
Location_base_pair Starts at 45409564 and ends at 45422059 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DUOXA1   26507
Cards
Entrez_Gene (NCBI)DUOXA1  90527  dual oxidase maturation factor 1
AliasesNIP; NUMBIP; mol
GeneCards (Weizmann)DUOXA1
Ensembl hg19 (Hinxton)ENSG00000140254 [Gene_View]  chr15:45409564-45422059 [Contig_View]  DUOXA1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000140254 [Gene_View]  chr15:45409564-45422059 [Contig_View]  DUOXA1 [Vega]
ICGC DataPortalENSG00000140254
TCGA cBioPortalDUOXA1
AceView (NCBI)DUOXA1
Genatlas (Paris)DUOXA1
WikiGenes90527
SOURCE (Princeton)DUOXA1
Genetics Home Reference (NIH)DUOXA1
Genomic and cartography
GoldenPath hg19 (UCSC)DUOXA1  -     chr15:45409564-45422059 -  15q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DUOXA1  -     15q21.1   [Description]    (hg38-Dec_2013)
EnsemblDUOXA1 - 15q21.1 [CytoView hg19]  DUOXA1 - 15q21.1 [CytoView hg38]
Mapping of homologs : NCBIDUOXA1 [Mapview hg19]  DUOXA1 [Mapview hg38]
OMIM612771   
Gene and transcription
Genbank (Entrez)AK056896 AK292771 BC020841 BC029819 BM977797
RefSeq transcript (Entrez)NM_001276264 NM_001276265 NM_001276266 NM_001276267 NM_001276268 NM_144565
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_033105 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)DUOXA1
Cluster EST : UnigeneHs.356664 [ NCBI ]
CGAP (NCI)Hs.356664
Alternative Splicing GalleryENSG00000140254
Gene ExpressionDUOXA1 [ NCBI-GEO ]   DUOXA1 [ EBI - ARRAY_EXPRESS ]   DUOXA1 [ SEEK ]   DUOXA1 [ MEM ]
Gene Expression Viewer (FireBrowse)DUOXA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90527
GTEX Portal (Tissue expression)DUOXA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ1HG43   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ1HG43  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ1HG43
Splice isoforms : SwissVarQ1HG43
PhosPhoSitePlusQ1HG43
Domains : Interpro (EBI)Dual_oxidase_maturation_fac   
Domain families : Pfam (Sanger)DuoxA (PF10204)   
Domain families : Pfam (NCBI)pfam10204   
Conserved Domain (NCBI)DUOXA1
DMDM Disease mutations90527
Blocks (Seattle)DUOXA1
SuperfamilyQ1HG43
Human Protein AtlasENSG00000140254
Peptide AtlasQ1HG43
HPRD14829
IPIIPI00815875   IPI00167028   IPI00065518   
Protein Interaction databases
DIP (DOE-UCLA)Q1HG43
IntAct (EBI)Q1HG43
FunCoupENSG00000140254
BioGRIDDUOXA1
STRING (EMBL)DUOXA1
ZODIACDUOXA1
Ontologies - Pathways
QuickGOQ1HG43
Ontology : AmiGOendoplasmic reticulum membrane  plasma membrane  protein transport  membrane  integral component of membrane  hydrogen peroxide metabolic process  positive regulation of neuron differentiation  regulation of inflammatory response  positive regulation of reactive oxygen species metabolic process  regulation of thyroid hormone generation  
Ontology : EGO-EBIendoplasmic reticulum membrane  plasma membrane  protein transport  membrane  integral component of membrane  hydrogen peroxide metabolic process  positive regulation of neuron differentiation  regulation of inflammatory response  positive regulation of reactive oxygen species metabolic process  regulation of thyroid hormone generation  
NDEx NetworkDUOXA1
Atlas of Cancer Signalling NetworkDUOXA1
Wikipedia pathwaysDUOXA1
Orthology - Evolution
OrthoDB90527
GeneTree (enSembl)ENSG00000140254
Phylogenetic Trees/Animal Genes : TreeFamDUOXA1
HOVERGENQ1HG43
HOGENOMQ1HG43
Homologs : HomoloGeneDUOXA1
Homology/Alignments : Family Browser (UCSC)DUOXA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDUOXA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DUOXA1
dbVarDUOXA1
ClinVarDUOXA1
1000_GenomesDUOXA1 
Exome Variant ServerDUOXA1
ExAC (Exome Aggregation Consortium)DUOXA1 (select the gene name)
Genetic variants : HAPMAP90527
Genomic Variants (DGV)DUOXA1 [DGVbeta]
DECIPHER (Syndromes)15:45409564-45422059  ENSG00000140254
CONAN: Copy Number AnalysisDUOXA1 
Mutations
ICGC Data PortalDUOXA1 
TCGA Data PortalDUOXA1 
Broad Tumor PortalDUOXA1
OASIS PortalDUOXA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDUOXA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDUOXA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DUOXA1
DgiDB (Drug Gene Interaction Database)DUOXA1
DoCM (Curated mutations)DUOXA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DUOXA1 (select a term)
intoGenDUOXA1
Cancer3DDUOXA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612771   
Orphanet
MedgenDUOXA1
Genetic Testing Registry DUOXA1
NextProtQ1HG43 [Medical]
TSGene90527
GENETestsDUOXA1
Huge Navigator DUOXA1 [HugePedia]
snp3D : Map Gene to Disease90527
BioCentury BCIQDUOXA1
ClinGenDUOXA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90527
Chemical/Pharm GKB GenePA145008497
Clinical trialDUOXA1
Miscellaneous
canSAR (ICR)DUOXA1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDUOXA1
EVEXDUOXA1
GoPubMedDUOXA1
iHOPDUOXA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 14:59:28 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.