Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DUOXA2 (dual oxidase maturation factor 2)

Identity

Other aliasSIMNIPHOM
TDH5
HGNC (Hugo) DUOXA2
LocusID (NCBI) 405753
Atlas_Id 45935
Location 15q21.1  [Link to chromosome band 15q21]
Location_base_pair Starts at 45406523 and ends at 45410301 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DUOXA2   32698
Cards
Entrez_Gene (NCBI)DUOXA2  405753  dual oxidase maturation factor 2
AliasesSIMNIPHOM; TDH5
GeneCards (Weizmann)DUOXA2
Ensembl hg19 (Hinxton)ENSG00000140274 [Gene_View]  chr15:45406523-45410301 [Contig_View]  DUOXA2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000140274 [Gene_View]  chr15:45406523-45410301 [Contig_View]  DUOXA2 [Vega]
ICGC DataPortalENSG00000140274
TCGA cBioPortalDUOXA2
AceView (NCBI)DUOXA2
Genatlas (Paris)DUOXA2
WikiGenes405753
SOURCE (Princeton)DUOXA2
Genetics Home Reference (NIH)DUOXA2
Genomic and cartography
GoldenPath hg19 (UCSC)DUOXA2  -     chr15:45406523-45410301 +  15q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DUOXA2  -     15q21.1   [Description]    (hg38-Dec_2013)
EnsemblDUOXA2 - 15q21.1 [CytoView hg19]  DUOXA2 - 15q21.1 [CytoView hg38]
Mapping of homologs : NCBIDUOXA2 [Mapview hg19]  DUOXA2 [Mapview hg38]
OMIM274900   612772   
Gene and transcription
Genbank (Entrez)AK303955 BC137465 BM987789 BX537581 DB243076
RefSeq transcript (Entrez)NM_207581
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_009447 NG_016992 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)DUOXA2
Cluster EST : UnigeneHs.497987 [ NCBI ]
CGAP (NCI)Hs.497987
Alternative Splicing GalleryENSG00000140274
Gene ExpressionDUOXA2 [ NCBI-GEO ]   DUOXA2 [ EBI - ARRAY_EXPRESS ]   DUOXA2 [ SEEK ]   DUOXA2 [ MEM ]
Gene Expression Viewer (FireBrowse)DUOXA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)405753
GTEX Portal (Tissue expression)DUOXA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ1HG44   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ1HG44  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ1HG44
Splice isoforms : SwissVarQ1HG44
PhosPhoSitePlusQ1HG44
Domains : Interpro (EBI)Dual_oxidase_maturation_fac   
Domain families : Pfam (Sanger)DuoxA (PF10204)   
Domain families : Pfam (NCBI)pfam10204   
Conserved Domain (NCBI)DUOXA2
DMDM Disease mutations405753
Blocks (Seattle)DUOXA2
SuperfamilyQ1HG44
Human Protein AtlasENSG00000140274
Peptide AtlasQ1HG44
HPRD14224
IPIIPI00183661   IPI00478639   
Protein Interaction databases
DIP (DOE-UCLA)Q1HG44
IntAct (EBI)Q1HG44
FunCoupENSG00000140274
BioGRIDDUOXA2
STRING (EMBL)DUOXA2
ZODIACDUOXA2
Ontologies - Pathways
QuickGOQ1HG44
Ontology : AmiGOendoplasmic reticulum membrane  protein transport  membrane  integral component of membrane  hydrogen peroxide metabolic process  regulation of inflammatory response  regulation of thyroid hormone generation  
Ontology : EGO-EBIendoplasmic reticulum membrane  protein transport  membrane  integral component of membrane  hydrogen peroxide metabolic process  regulation of inflammatory response  regulation of thyroid hormone generation  
Pathways : KEGGThyroid hormone synthesis   
NDEx NetworkDUOXA2
Atlas of Cancer Signalling NetworkDUOXA2
Wikipedia pathwaysDUOXA2
Orthology - Evolution
OrthoDB405753
GeneTree (enSembl)ENSG00000140274
Phylogenetic Trees/Animal Genes : TreeFamDUOXA2
HOVERGENQ1HG44
HOGENOMQ1HG44
Homologs : HomoloGeneDUOXA2
Homology/Alignments : Family Browser (UCSC)DUOXA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDUOXA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DUOXA2
dbVarDUOXA2
ClinVarDUOXA2
1000_GenomesDUOXA2 
Exome Variant ServerDUOXA2
ExAC (Exome Aggregation Consortium)DUOXA2 (select the gene name)
Genetic variants : HAPMAP405753
Genomic Variants (DGV)DUOXA2 [DGVbeta]
DECIPHER (Syndromes)15:45406523-45410301  ENSG00000140274
CONAN: Copy Number AnalysisDUOXA2 
Mutations
ICGC Data PortalDUOXA2 
TCGA Data PortalDUOXA2 
Broad Tumor PortalDUOXA2
OASIS PortalDUOXA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDUOXA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDUOXA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DUOXA2
DgiDB (Drug Gene Interaction Database)DUOXA2
DoCM (Curated mutations)DUOXA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DUOXA2 (select a term)
intoGenDUOXA2
Cancer3DDUOXA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM274900    612772   
Orphanet12671   
MedgenDUOXA2
Genetic Testing Registry DUOXA2
NextProtQ1HG44 [Medical]
TSGene405753
GENETestsDUOXA2
Huge Navigator DUOXA2 [HugePedia]
snp3D : Map Gene to Disease405753
BioCentury BCIQDUOXA2
ClinGenDUOXA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD405753
Chemical/Pharm GKB GenePA145008523
Clinical trialDUOXA2
Miscellaneous
canSAR (ICR)DUOXA2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDUOXA2
EVEXDUOXA2
GoPubMedDUOXA2
iHOPDUOXA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:03:58 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.