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DUPD1 (dual specificity phosphatase and pro isomerase domain containing 1)

Identity

Alias_symbol (synonym)DUSP27
Other aliasFMDSP
HGNC (Hugo) DUPD1
LocusID (NCBI) 338599
Atlas_Id 62670
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 75037836 and ends at 75058514 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DUPD1   23481
Cards
Entrez_Gene (NCBI)DUPD1  338599  dual specificity phosphatase and pro isomerase domain containing 1
AliasesDUSP27; FMDSP
GeneCards (Weizmann)DUPD1
Ensembl hg19 (Hinxton)ENSG00000188716 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188716 [Gene_View]  chr10:75037836-75058514 [Contig_View]  DUPD1 [Vega]
ICGC DataPortalENSG00000188716
TCGA cBioPortalDUPD1
AceView (NCBI)DUPD1
Genatlas (Paris)DUPD1
WikiGenes338599
SOURCE (Princeton)DUPD1
Genetics Home Reference (NIH)DUPD1
Genomic and cartography
GoldenPath hg38 (UCSC)DUPD1  -     chr10:75037836-75058514 -  10q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DUPD1  -     10q22.2   [Description]    (hg19-Feb_2009)
EnsemblDUPD1 - 10q22.2 [CytoView hg19]  DUPD1 - 10q22.2 [CytoView hg38]
Mapping of homologs : NCBIDUPD1 [Mapview hg19]  DUPD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY686755 BC137321 BC137322
RefSeq transcript (Entrez)NM_001003892
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DUPD1
Cluster EST : UnigeneHs.535090 [ NCBI ]
CGAP (NCI)Hs.535090
Alternative Splicing GalleryENSG00000188716
Gene ExpressionDUPD1 [ NCBI-GEO ]   DUPD1 [ EBI - ARRAY_EXPRESS ]   DUPD1 [ SEEK ]   DUPD1 [ MEM ]
Gene Expression Viewer (FireBrowse)DUPD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338599
GTEX Portal (Tissue expression)DUPD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68J44   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68J44  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68J44
Splice isoforms : SwissVarQ68J44
Catalytic activity : Enzyme3.1.3.16 [ Enzyme-Expasy ]   3.1.3.163.1.3.16 [ IntEnz-EBI ]   3.1.3.16 [ BRENDA ]   3.1.3.16 [ KEGG ]   
PhosPhoSitePlusQ68J44
Domaine pattern : Prosite (Expaxy)TYR_PHOSPHATASE_1 (PS00383)    TYR_PHOSPHATASE_2 (PS50056)    TYR_PHOSPHATASE_DUAL (PS50054)   
Domains : Interpro (EBI)Atypical_DUSP    Atypical_DUSP_famA    Dual-sp_phosphatase_cat-dom    DUSP    Prot-tyrosine_phosphatase-like    Tyr_Pase_AS    TYR_PHOSPHATASE_dom    TYR_PHOSPHATASE_DUAL_dom   
Domain families : Pfam (Sanger)DSPc (PF00782)   
Domain families : Pfam (NCBI)pfam00782   
Domain families : Smart (EMBL)DSPc (SM00195)  
Conserved Domain (NCBI)DUPD1
DMDM Disease mutations338599
Blocks (Seattle)DUPD1
PDB (SRS)2Y96   
PDB (PDBSum)2Y96   
PDB (IMB)2Y96   
PDB (RSDB)2Y96   
Structural Biology KnowledgeBase2Y96   
SCOP (Structural Classification of Proteins)2Y96   
CATH (Classification of proteins structures)2Y96   
SuperfamilyQ68J44
Human Protein AtlasENSG00000188716
Peptide AtlasQ68J44
HPRD16846
IPIIPI00456156   
Protein Interaction databases
DIP (DOE-UCLA)Q68J44
IntAct (EBI)Q68J44
FunCoupENSG00000188716
BioGRIDDUPD1
STRING (EMBL)DUPD1
ZODIACDUPD1
Ontologies - Pathways
QuickGOQ68J44
Ontology : AmiGOprotein tyrosine phosphatase activity  cytoplasm  protein tyrosine/serine/threonine phosphatase activity  peptidyl-tyrosine dephosphorylation  
Ontology : EGO-EBIprotein tyrosine phosphatase activity  cytoplasm  protein tyrosine/serine/threonine phosphatase activity  peptidyl-tyrosine dephosphorylation  
NDEx NetworkDUPD1
Atlas of Cancer Signalling NetworkDUPD1
Wikipedia pathwaysDUPD1
Orthology - Evolution
OrthoDB338599
GeneTree (enSembl)ENSG00000188716
Phylogenetic Trees/Animal Genes : TreeFamDUPD1
HOVERGENQ68J44
HOGENOMQ68J44
Homologs : HomoloGeneDUPD1
Homology/Alignments : Family Browser (UCSC)DUPD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDUPD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DUPD1
dbVarDUPD1
ClinVarDUPD1
1000_GenomesDUPD1 
Exome Variant ServerDUPD1
ExAC (Exome Aggregation Consortium)DUPD1 (select the gene name)
Genetic variants : HAPMAP338599
Genomic Variants (DGV)DUPD1 [DGVbeta]
DECIPHERDUPD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDUPD1 
Mutations
ICGC Data PortalDUPD1 
TCGA Data PortalDUPD1 
Broad Tumor PortalDUPD1
OASIS PortalDUPD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDUPD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDUPD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DUPD1
DgiDB (Drug Gene Interaction Database)DUPD1
DoCM (Curated mutations)DUPD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DUPD1 (select a term)
intoGenDUPD1
Cancer3DDUPD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDUPD1
Genetic Testing Registry DUPD1
NextProtQ68J44 [Medical]
TSGene338599
GENETestsDUPD1
Target ValidationDUPD1
Huge Navigator DUPD1 [HugePedia]
snp3D : Map Gene to Disease338599
BioCentury BCIQDUPD1
ClinGenDUPD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338599
Chemical/Pharm GKB GenePA134959776
Clinical trialDUPD1
Miscellaneous
canSAR (ICR)DUPD1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDUPD1
EVEXDUPD1
GoPubMedDUPD1
iHOPDUPD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:06:43 CEST 2017

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