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DUS3L (dihydrouridine synthase 3 like)

Identity

Alias_namesdihydrouridine synthase 3-like (S. cerevisiae)
Alias_symbol (synonym)DUS3
FLJ13896
Other alias
HGNC (Hugo) DUS3L
LocusID (NCBI) 56931
Atlas_Id 62672
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 5785142 and ends at 5791238 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DUS3L (19p13.3) / PRR22 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DUS3L   26920
Cards
Entrez_Gene (NCBI)DUS3L  56931  dihydrouridine synthase 3 like
AliasesDUS3
GeneCards (Weizmann)DUS3L
Ensembl hg19 (Hinxton)ENSG00000141994 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141994 [Gene_View]  chr19:5785142-5791238 [Contig_View]  DUS3L [Vega]
ICGC DataPortalENSG00000141994
TCGA cBioPortalDUS3L
AceView (NCBI)DUS3L
Genatlas (Paris)DUS3L
WikiGenes56931
SOURCE (Princeton)DUS3L
Genetics Home Reference (NIH)DUS3L
Genomic and cartography
GoldenPath hg38 (UCSC)DUS3L  -     chr19:5785142-5791238 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DUS3L  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblDUS3L - 19p13.3 [CytoView hg19]  DUS3L - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIDUS3L [Mapview hg19]  DUS3L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF074704 AF091072 AK023958 AK225840 AK297037
RefSeq transcript (Entrez)NM_001161619 NM_020175
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DUS3L
Cluster EST : UnigeneHs.284297 [ NCBI ]
CGAP (NCI)Hs.284297
Alternative Splicing GalleryENSG00000141994
Gene ExpressionDUS3L [ NCBI-GEO ]   DUS3L [ EBI - ARRAY_EXPRESS ]   DUS3L [ SEEK ]   DUS3L [ MEM ]
Gene Expression Viewer (FireBrowse)DUS3L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56931
GTEX Portal (Tissue expression)DUS3L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96G46   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96G46  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96G46
Splice isoforms : SwissVarQ96G46
Catalytic activity : Enzyme1.3.1.- [ Enzyme-Expasy ]   1.3.1.-1.3.1.- [ IntEnz-EBI ]   1.3.1.- [ BRENDA ]   1.3.1.- [ KEGG ]   
PhosPhoSitePlusQ96G46
Domaine pattern : Prosite (Expaxy)UPF0034 (PS01136)    ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Aldolase_TIM    tRNA_hU_synthase    tRNA_hU_synthase_CS    Znf_CCCH   
Domain families : Pfam (Sanger)Dus (PF01207)   
Domain families : Pfam (NCBI)pfam01207   
Conserved Domain (NCBI)DUS3L
DMDM Disease mutations56931
Blocks (Seattle)DUS3L
SuperfamilyQ96G46
Human Protein AtlasENSG00000141994
Peptide AtlasQ96G46
HPRD14252
IPIIPI00784107   IPI00640947   IPI00186125   IPI00910843   
Protein Interaction databases
DIP (DOE-UCLA)Q96G46
IntAct (EBI)Q96G46
FunCoupENSG00000141994
BioGRIDDUS3L
STRING (EMBL)DUS3L
ZODIACDUS3L
Ontologies - Pathways
QuickGOQ96G46
Ontology : AmiGOtRNA dihydrouridine synthesis  RNA binding  tRNA dihydrouridine synthase activity  metal ion binding  flavin adenine dinucleotide binding  oxidation-reduction process  
Ontology : EGO-EBItRNA dihydrouridine synthesis  RNA binding  tRNA dihydrouridine synthase activity  metal ion binding  flavin adenine dinucleotide binding  oxidation-reduction process  
NDEx NetworkDUS3L
Atlas of Cancer Signalling NetworkDUS3L
Wikipedia pathwaysDUS3L
Orthology - Evolution
OrthoDB56931
GeneTree (enSembl)ENSG00000141994
Phylogenetic Trees/Animal Genes : TreeFamDUS3L
HOVERGENQ96G46
HOGENOMQ96G46
Homologs : HomoloGeneDUS3L
Homology/Alignments : Family Browser (UCSC)DUS3L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDUS3L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DUS3L
dbVarDUS3L
ClinVarDUS3L
1000_GenomesDUS3L 
Exome Variant ServerDUS3L
ExAC (Exome Aggregation Consortium)DUS3L (select the gene name)
Genetic variants : HAPMAP56931
Genomic Variants (DGV)DUS3L [DGVbeta]
DECIPHERDUS3L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDUS3L 
Mutations
ICGC Data PortalDUS3L 
TCGA Data PortalDUS3L 
Broad Tumor PortalDUS3L
OASIS PortalDUS3L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDUS3L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDUS3L
BioMutasearch DUS3L
DgiDB (Drug Gene Interaction Database)DUS3L
DoCM (Curated mutations)DUS3L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DUS3L (select a term)
intoGenDUS3L
Cancer3DDUS3L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDUS3L
Genetic Testing Registry DUS3L
NextProtQ96G46 [Medical]
TSGene56931
GENETestsDUS3L
Target ValidationDUS3L
Huge Navigator DUS3L [HugePedia]
snp3D : Map Gene to Disease56931
BioCentury BCIQDUS3L
ClinGenDUS3L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56931
Chemical/Pharm GKB GenePA142671938
Clinical trialDUS3L
Miscellaneous
canSAR (ICR)DUS3L (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDUS3L
EVEXDUS3L
GoPubMedDUS3L
iHOPDUS3L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:46:35 CEST 2017

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