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DUSP13 (dual specificity phosphatase 13)

Identity

Alias_symbol (synonym)BEDP
TMDP
FLJ32450
DUSP13A
DUSP13B
Other aliasMDSP
SKRP4
HGNC (Hugo) DUSP13
LocusID (NCBI) 51207
Atlas_Id 62675
Location 10q22.2  [Link to chromosome band 10q22]
Location_base_pair Starts at 75094432 and ends at 75109212 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PCDH15 (10q21.1) / DUSP13 (10q22.2)SAMD8 (10q22.2) / DUSP13 (10q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DUSP13   19681
Cards
Entrez_Gene (NCBI)DUSP13  51207  dual specificity phosphatase 13
AliasesBEDP; DUSP13A; DUSP13B; MDSP; 
SKRP4; TMDP
GeneCards (Weizmann)DUSP13
Ensembl hg19 (Hinxton)ENSG00000079393 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000079393 [Gene_View]  chr10:75094432-75109212 [Contig_View]  DUSP13 [Vega]
ICGC DataPortalENSG00000079393
TCGA cBioPortalDUSP13
AceView (NCBI)DUSP13
Genatlas (Paris)DUSP13
WikiGenes51207
SOURCE (Princeton)DUSP13
Genetics Home Reference (NIH)DUSP13
Genomic and cartography
GoldenPath hg38 (UCSC)DUSP13  -     chr10:75094432-75109212 -  10q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DUSP13  -     10q22.2   [Description]    (hg19-Feb_2009)
EnsemblDUSP13 - 10q22.2 [CytoView hg19]  DUSP13 - 10q22.2 [CytoView hg38]
Mapping of homologs : NCBIDUSP13 [Mapview hg19]  DUSP13 [Mapview hg38]
OMIM613191   
Gene and transcription
Genbank (Entrez)AB027004 AB103375 AI971328 AK057012 AK127886
RefSeq transcript (Entrez)NM_001007271 NM_001007272 NM_001007273 NM_001007274 NM_001007275 NM_001320842 NM_001320843 NM_016364
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DUSP13
Cluster EST : UnigeneHs.178170 [ NCBI ]
CGAP (NCI)Hs.178170
Alternative Splicing GalleryENSG00000079393
Gene ExpressionDUSP13 [ NCBI-GEO ]   DUSP13 [ EBI - ARRAY_EXPRESS ]   DUSP13 [ SEEK ]   DUSP13 [ MEM ]
Gene Expression Viewer (FireBrowse)DUSP13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51207
GTEX Portal (Tissue expression)DUSP13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UII6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UII6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UII6
Splice isoforms : SwissVarQ9UII6
Catalytic activity : Enzyme3.1.3.16 [ Enzyme-Expasy ]   3.1.3.163.1.3.16 [ IntEnz-EBI ]   3.1.3.16 [ BRENDA ]   3.1.3.16 [ KEGG ]   
PhosPhoSitePlusQ9UII6
Domaine pattern : Prosite (Expaxy)TYR_PHOSPHATASE_1 (PS00383)    TYR_PHOSPHATASE_2 (PS50056)    TYR_PHOSPHATASE_DUAL (PS50054)   
Domains : Interpro (EBI)Atypical_DUSP    Atypical_DUSP_famA    Dual-sp_phosphatase_cat-dom    DUSP    Prot-tyrosine_phosphatase-like    Tyr_Pase_AS    TYR_PHOSPHATASE_dom    TYR_PHOSPHATASE_DUAL_dom   
Domain families : Pfam (Sanger)DSPc (PF00782)   
Domain families : Pfam (NCBI)pfam00782   
Domain families : Smart (EMBL)DSPc (SM00195)  
Conserved Domain (NCBI)DUSP13
DMDM Disease mutations51207
Blocks (Seattle)DUSP13
PDB (SRS)2GWO    2PQ5   
PDB (PDBSum)2GWO    2PQ5   
PDB (IMB)2GWO    2PQ5   
PDB (RSDB)2GWO    2PQ5   
Structural Biology KnowledgeBase2GWO    2PQ5   
SCOP (Structural Classification of Proteins)2GWO    2PQ5   
CATH (Classification of proteins structures)2GWO    2PQ5   
SuperfamilyQ9UII6
Human Protein AtlasENSG00000079393
Peptide AtlasQ9UII6
HPRD13251
IPIIPI00465137   IPI00973092   IPI01018872   IPI00514257   IPI00514507   IPI00942138   IPI00983977   
Protein Interaction databases
DIP (DOE-UCLA)Q9UII6
IntAct (EBI)Q9UII6
FunCoupENSG00000079393
BioGRIDDUSP13
STRING (EMBL)DUSP13
ZODIACDUSP13
Ontologies - Pathways
QuickGOQ9UII6
Ontology : AmiGOprotein tyrosine phosphatase activity  protein binding  protein dephosphorylation  spermatogenesis  protein tyrosine/serine/threonine phosphatase activity  dephosphorylation  phosphatase activity  peptidyl-tyrosine dephosphorylation  meiotic cell cycle  
Ontology : EGO-EBIprotein tyrosine phosphatase activity  protein binding  protein dephosphorylation  spermatogenesis  protein tyrosine/serine/threonine phosphatase activity  dephosphorylation  phosphatase activity  peptidyl-tyrosine dephosphorylation  meiotic cell cycle  
NDEx NetworkDUSP13
Atlas of Cancer Signalling NetworkDUSP13
Wikipedia pathwaysDUSP13
Orthology - Evolution
OrthoDB51207
GeneTree (enSembl)ENSG00000079393
Phylogenetic Trees/Animal Genes : TreeFamDUSP13
HOVERGENQ9UII6
HOGENOMQ9UII6
Homologs : HomoloGeneDUSP13
Homology/Alignments : Family Browser (UCSC)DUSP13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDUSP13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DUSP13
dbVarDUSP13
ClinVarDUSP13
1000_GenomesDUSP13 
Exome Variant ServerDUSP13
ExAC (Exome Aggregation Consortium)DUSP13 (select the gene name)
Genetic variants : HAPMAP51207
Genomic Variants (DGV)DUSP13 [DGVbeta]
DECIPHERDUSP13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDUSP13 
Mutations
ICGC Data PortalDUSP13 
TCGA Data PortalDUSP13 
Broad Tumor PortalDUSP13
OASIS PortalDUSP13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDUSP13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDUSP13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DUSP13
DgiDB (Drug Gene Interaction Database)DUSP13
DoCM (Curated mutations)DUSP13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DUSP13 (select a term)
intoGenDUSP13
Cancer3DDUSP13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613191   
Orphanet
MedgenDUSP13
Genetic Testing Registry DUSP13
NextProtQ9UII6 [Medical]
TSGene51207
GENETestsDUSP13
Target ValidationDUSP13
Huge Navigator DUSP13 [HugePedia]
snp3D : Map Gene to Disease51207
BioCentury BCIQDUSP13
ClinGenDUSP13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51207
Chemical/Pharm GKB GenePA134939640
Clinical trialDUSP13
Miscellaneous
canSAR (ICR)DUSP13 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDUSP13
EVEXDUSP13
GoPubMedDUSP13
iHOPDUSP13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:46:36 CEST 2017

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