Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DUSP27 (dual specificity phosphatase 27 (putative))

Identity

Other alias-
HGNC (Hugo) DUSP27
LocusID (NCBI) 92235
Atlas_Id 62677
Location 1q24.1  [Link to chromosome band 1q24]
Location_base_pair Starts at 167094090 and ends at 167129129 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DUSP27 (1q24.1) / MALAT1 (11q13.1)KIFAP3 (1q24.2) / DUSP27 (1q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DUSP27   25034
Cards
Entrez_Gene (NCBI)DUSP27  92235  dual specificity phosphatase 27 (putative)
Aliases
GeneCards (Weizmann)DUSP27
Ensembl hg19 (Hinxton)ENSG00000198842 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198842 [Gene_View]  chr1:167094090-167129129 [Contig_View]  DUSP27 [Vega]
ICGC DataPortalENSG00000198842
TCGA cBioPortalDUSP27
AceView (NCBI)DUSP27
Genatlas (Paris)DUSP27
WikiGenes92235
SOURCE (Princeton)DUSP27
Genetics Home Reference (NIH)DUSP27
Genomic and cartography
GoldenPath hg38 (UCSC)DUSP27  -     chr1:167094090-167129129 +  1q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DUSP27  -     1q24.1   [Description]    (hg19-Feb_2009)
EnsemblDUSP27 - 1q24.1 [CytoView hg19]  DUSP27 - 1q24.1 [CytoView hg38]
Mapping of homologs : NCBIDUSP27 [Mapview hg19]  DUSP27 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF119045 AK094814 BC115387
RefSeq transcript (Entrez)NM_001080426
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DUSP27
Cluster EST : UnigeneHs.632462 [ NCBI ]
CGAP (NCI)Hs.632462
Alternative Splicing GalleryENSG00000198842
Gene ExpressionDUSP27 [ NCBI-GEO ]   DUSP27 [ EBI - ARRAY_EXPRESS ]   DUSP27 [ SEEK ]   DUSP27 [ MEM ]
Gene Expression Viewer (FireBrowse)DUSP27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92235
GTEX Portal (Tissue expression)DUSP27
Human Protein AtlasENSG00000198842-DUSP27 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VZP5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VZP5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VZP5
Splice isoforms : SwissVarQ5VZP5
PhosPhoSitePlusQ5VZP5
Domaine pattern : Prosite (Expaxy)TYR_PHOSPHATASE_2 (PS50056)    TYR_PHOSPHATASE_DUAL (PS50054)   
Domains : Interpro (EBI)Atypical_DUSP    Atypical_DUSP_famA    Dual-sp_phosphatase_cat-dom    DUSP    Prot-tyrosine_phosphatase-like    TYR_PHOSPHATASE_dom    TYR_PHOSPHATASE_DUAL_dom   
Domain families : Pfam (Sanger)DSPc (PF00782)   
Domain families : Pfam (NCBI)pfam00782   
Domain families : Smart (EMBL)DSPc (SM00195)  
Conserved Domain (NCBI)DUSP27
DMDM Disease mutations92235
Blocks (Seattle)DUSP27
SuperfamilyQ5VZP5
Human Protein Atlas [tissue]ENSG00000198842-DUSP27 [tissue]
Peptide AtlasQ5VZP5
IPIIPI00740180   
Protein Interaction databases
DIP (DOE-UCLA)Q5VZP5
IntAct (EBI)Q5VZP5
FunCoupENSG00000198842
BioGRIDDUSP27
STRING (EMBL)DUSP27
ZODIACDUSP27
Ontologies - Pathways
QuickGOQ5VZP5
Ontology : AmiGOprotein dephosphorylation  protein tyrosine/serine/threonine phosphatase activity  
Ontology : EGO-EBIprotein dephosphorylation  protein tyrosine/serine/threonine phosphatase activity  
NDEx NetworkDUSP27
Atlas of Cancer Signalling NetworkDUSP27
Wikipedia pathwaysDUSP27
Orthology - Evolution
OrthoDB92235
GeneTree (enSembl)ENSG00000198842
Phylogenetic Trees/Animal Genes : TreeFamDUSP27
HOVERGENQ5VZP5
HOGENOMQ5VZP5
Homologs : HomoloGeneDUSP27
Homology/Alignments : Family Browser (UCSC)DUSP27
Gene fusions - Rearrangements
Fusion: Tumor Portal DUSP27
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDUSP27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DUSP27
dbVarDUSP27
ClinVarDUSP27
1000_GenomesDUSP27 
Exome Variant ServerDUSP27
ExAC (Exome Aggregation Consortium)ENSG00000198842
GNOMAD BrowserENSG00000198842
Genetic variants : HAPMAP92235
Genomic Variants (DGV)DUSP27 [DGVbeta]
DECIPHERDUSP27 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDUSP27 
Mutations
ICGC Data PortalDUSP27 
TCGA Data PortalDUSP27 
Broad Tumor PortalDUSP27
OASIS PortalDUSP27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDUSP27  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDUSP27
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DUSP27
DgiDB (Drug Gene Interaction Database)DUSP27
DoCM (Curated mutations)DUSP27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DUSP27 (select a term)
intoGenDUSP27
Cancer3DDUSP27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDUSP27
Genetic Testing Registry DUSP27
NextProtQ5VZP5 [Medical]
TSGene92235
GENETestsDUSP27
Target ValidationDUSP27
Huge Navigator DUSP27 [HugePedia]
snp3D : Map Gene to Disease92235
BioCentury BCIQDUSP27
ClinGenDUSP27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92235
Chemical/Pharm GKB GenePA142671922
Clinical trialDUSP27
Miscellaneous
canSAR (ICR)DUSP27 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDUSP27
EVEXDUSP27
GoPubMedDUSP27
iHOPDUSP27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:45:17 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.