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DUSP28 (dual specificity phosphatase 28)

Identity

Alias_symbol (synonym)VHP
DUSP26
Other alias
HGNC (Hugo) DUSP28
LocusID (NCBI) 285193
Atlas_Id 55311
Location 2q37.3  [Link to chromosome band 2q37]
Location_base_pair Starts at 241499471 and ends at 241503431 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DUSP28   33237
Cards
Entrez_Gene (NCBI)DUSP28  285193  dual specificity phosphatase 28
AliasesDUSP26; VHP
GeneCards (Weizmann)DUSP28
Ensembl hg19 (Hinxton)ENSG00000188542 [Gene_View]  chr2:241499471-241503431 [Contig_View]  DUSP28 [Vega]
Ensembl hg38 (Hinxton)ENSG00000188542 [Gene_View]  chr2:241499471-241503431 [Contig_View]  DUSP28 [Vega]
ICGC DataPortalENSG00000188542
TCGA cBioPortalDUSP28
AceView (NCBI)DUSP28
Genatlas (Paris)DUSP28
WikiGenes285193
SOURCE (Princeton)DUSP28
Genetics Home Reference (NIH)DUSP28
Genomic and cartography
GoldenPath hg19 (UCSC)DUSP28  -     chr2:241499471-241503431 +  2q37.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DUSP28  -     2q37.3   [Description]    (hg38-Dec_2013)
EnsemblDUSP28 - 2q37.3 [CytoView hg19]  DUSP28 - 2q37.3 [CytoView hg38]
Mapping of homologs : NCBIDUSP28 [Mapview hg19]  DUSP28 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC036198 BG656420 BQ777661
RefSeq transcript (Entrez)NM_001033575
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929308
Consensus coding sequences : CCDS (NCBI)DUSP28
Cluster EST : UnigeneHs.672568 [ NCBI ]
CGAP (NCI)Hs.672568
Alternative Splicing GalleryENSG00000188542
Gene ExpressionDUSP28 [ NCBI-GEO ]   DUSP28 [ EBI - ARRAY_EXPRESS ]   DUSP28 [ SEEK ]   DUSP28 [ MEM ]
Gene Expression Viewer (FireBrowse)DUSP28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285193
GTEX Portal (Tissue expression)DUSP28
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G0W2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4G0W2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G0W2
Splice isoforms : SwissVarQ4G0W2
Catalytic activity : Enzyme3.1.3.16 [ Enzyme-Expasy ]   3.1.3.163.1.3.16 [ IntEnz-EBI ]   3.1.3.16 [ BRENDA ]   3.1.3.16 [ KEGG ]   
PhosPhoSitePlusQ4G0W2
Domaine pattern : Prosite (Expaxy)TYR_PHOSPHATASE_2 (PS50056)    TYR_PHOSPHATASE_DUAL (PS50054)   
Domains : Interpro (EBI)Dual-sp_phosphatase_cat-dom    DUSP    Prot-tyrosine_phosphatase-like    TYR_PHOSPHATASE_dom    TYR_PHOSPHATASE_DUAL_dom   
Domain families : Pfam (Sanger)DSPc (PF00782)   
Domain families : Pfam (NCBI)pfam00782   
Domain families : Smart (EMBL)DSPc (SM00195)  
Conserved Domain (NCBI)DUSP28
DMDM Disease mutations285193
Blocks (Seattle)DUSP28
SuperfamilyQ4G0W2
Human Protein AtlasENSG00000188542
Peptide AtlasQ4G0W2
HPRD18773
IPIIPI00175103   IPI00893868   
Protein Interaction databases
DIP (DOE-UCLA)Q4G0W2
IntAct (EBI)Q4G0W2
FunCoupENSG00000188542
BioGRIDDUSP28
STRING (EMBL)DUSP28
ZODIACDUSP28
Ontologies - Pathways
QuickGOQ4G0W2
Ontology : AmiGOprotein tyrosine phosphatase activity  protein tyrosine/serine/threonine phosphatase activity  peptidyl-tyrosine dephosphorylation  
Ontology : EGO-EBIprotein tyrosine phosphatase activity  protein tyrosine/serine/threonine phosphatase activity  peptidyl-tyrosine dephosphorylation  
NDEx NetworkDUSP28
Atlas of Cancer Signalling NetworkDUSP28
Wikipedia pathwaysDUSP28
Orthology - Evolution
OrthoDB285193
GeneTree (enSembl)ENSG00000188542
Phylogenetic Trees/Animal Genes : TreeFamDUSP28
HOVERGENQ4G0W2
HOGENOMQ4G0W2
Homologs : HomoloGeneDUSP28
Homology/Alignments : Family Browser (UCSC)DUSP28
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDUSP28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DUSP28
dbVarDUSP28
ClinVarDUSP28
1000_GenomesDUSP28 
Exome Variant ServerDUSP28
ExAC (Exome Aggregation Consortium)DUSP28 (select the gene name)
Genetic variants : HAPMAP285193
Genomic Variants (DGV)DUSP28 [DGVbeta]
DECIPHER (Syndromes)2:241499471-241503431  ENSG00000188542
CONAN: Copy Number AnalysisDUSP28 
Mutations
ICGC Data PortalDUSP28 
TCGA Data PortalDUSP28 
Broad Tumor PortalDUSP28
OASIS PortalDUSP28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDUSP28  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDUSP28
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DUSP28
DgiDB (Drug Gene Interaction Database)DUSP28
DoCM (Curated mutations)DUSP28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DUSP28 (select a term)
intoGenDUSP28
Cancer3DDUSP28(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDUSP28
Genetic Testing Registry DUSP28
NextProtQ4G0W2 [Medical]
TSGene285193
GENETestsDUSP28
Huge Navigator DUSP28 [HugePedia]
snp3D : Map Gene to Disease285193
BioCentury BCIQDUSP28
ClinGenDUSP28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285193
Chemical/Pharm GKB GenePA162384124
Clinical trialDUSP28
Miscellaneous
canSAR (ICR)DUSP28 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDUSP28
EVEXDUSP28
GoPubMedDUSP28
iHOPDUSP28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:59:31 CEST 2017

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