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DUXA (double homeobox A)

Identity

Other alias-
HGNC (Hugo) DUXA
LocusID (NCBI) 503835
Atlas_Id 62681
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57151726 and ends at 57167488 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DUXA   32179
Cards
Entrez_Gene (NCBI)DUXA  503835  double homeobox A
Aliases
GeneCards (Weizmann)DUXA
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:57151726-57167488 [Contig_View]  DUXA [Vega]
TCGA cBioPortalDUXA
AceView (NCBI)DUXA
Genatlas (Paris)DUXA
WikiGenes503835
SOURCE (Princeton)DUXA
Genetics Home Reference (NIH)DUXA
Genomic and cartography
GoldenPath hg38 (UCSC)DUXA  -     chr19:57151726-57167488 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DUXA  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblDUXA - 19q13.43 [CytoView hg19]  DUXA - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIDUXA [Mapview hg19]  DUXA [Mapview hg38]
OMIM611168   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001012729
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DUXA
Cluster EST : UnigeneHs.585857 [ NCBI ]
CGAP (NCI)Hs.585857
Gene ExpressionDUXA [ NCBI-GEO ]   DUXA [ EBI - ARRAY_EXPRESS ]   DUXA [ SEEK ]   DUXA [ MEM ]
Gene Expression Viewer (FireBrowse)DUXA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)503835
GTEX Portal (Tissue expression)DUXA
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NLW8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NLW8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NLW8
Splice isoforms : SwissVarA6NLW8
PhosPhoSitePlusA6NLW8
Domaine pattern : Prosite (Expaxy)HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_dom    HTH_motif   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)DUXA
DMDM Disease mutations503835
Blocks (Seattle)DUXA
SuperfamilyA6NLW8
Peptide AtlasA6NLW8
HPRD10619
IPIIPI00556392   
Protein Interaction databases
DIP (DOE-UCLA)A6NLW8
IntAct (EBI)A6NLW8
BioGRIDDUXA
STRING (EMBL)DUXA
ZODIACDUXA
Ontologies - Pathways
QuickGOA6NLW8
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkDUXA
Atlas of Cancer Signalling NetworkDUXA
Wikipedia pathwaysDUXA
Orthology - Evolution
OrthoDB503835
Phylogenetic Trees/Animal Genes : TreeFamDUXA
HOVERGENA6NLW8
HOGENOMA6NLW8
Homologs : HomoloGeneDUXA
Homology/Alignments : Family Browser (UCSC)DUXA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDUXA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DUXA
dbVarDUXA
ClinVarDUXA
1000_GenomesDUXA 
Exome Variant ServerDUXA
ExAC (Exome Aggregation Consortium)DUXA (select the gene name)
Genetic variants : HAPMAP503835
Genomic Variants (DGV)DUXA [DGVbeta]
DECIPHERDUXA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDUXA 
Mutations
ICGC Data PortalDUXA 
TCGA Data PortalDUXA 
Broad Tumor PortalDUXA
OASIS PortalDUXA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDUXA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDUXA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DUXA
DgiDB (Drug Gene Interaction Database)DUXA
DoCM (Curated mutations)DUXA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DUXA (select a term)
intoGenDUXA
Cancer3DDUXA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611168   
Orphanet
MedgenDUXA
Genetic Testing Registry DUXA
NextProtA6NLW8 [Medical]
TSGene503835
GENETestsDUXA
Target ValidationDUXA
Huge Navigator DUXA [HugePedia]
snp3D : Map Gene to Disease503835
BioCentury BCIQDUXA
ClinGenDUXA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD503835
Chemical/Pharm GKB GenePA142671924
Clinical trialDUXA
Miscellaneous
canSAR (ICR)DUXA (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDUXA
EVEXDUXA
GoPubMedDUXA
iHOPDUXA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:46:36 CEST 2017

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