Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DYDC1 (DPY30 domain containing 1)

Identity

Alias (NCBI)DPY30D1
HGNC (Hugo) DYDC1
HGNC Alias symbbA36D19.5
DPY30D1
LocusID (NCBI) 143241
Atlas_Id 62685
Location 10q23.1  [Link to chromosome band 10q23]
Location_base_pair Starts at 80336106 and ends at 80356758 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)DYDC1   23460
Cards
Entrez_Gene (NCBI)DYDC1    DPY30 domain containing 1
AliasesDPY30D1
GeneCards (Weizmann)DYDC1
Ensembl hg19 (Hinxton)ENSG00000170788 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170788 [Gene_View]  ENSG00000170788 [Sequence]  chr10:80336106-80356758 [Contig_View]  DYDC1 [Vega]
ICGC DataPortalENSG00000170788
TCGA cBioPortalDYDC1
AceView (NCBI)DYDC1
Genatlas (Paris)DYDC1
SOURCE (Princeton)DYDC1
Genetics Home Reference (NIH)DYDC1
Genomic and cartography
GoldenPath hg38 (UCSC)DYDC1  -     chr10:80336106-80356758 -  10q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DYDC1  -     10q23.1   [Description]    (hg19-Feb_2009)
GoldenPathDYDC1 - 10q23.1 [CytoView hg19]  DYDC1 - 10q23.1 [CytoView hg38]
ImmunoBaseENSG00000170788
Genome Data Viewer NCBIDYDC1 [Mapview hg19]  
OMIM615154   
Gene and transcription
Genbank (Entrez)AK125908 AK292542 BC019250 BI828082 DB091778
RefSeq transcript (Entrez)NM_001269053 NM_001370155 NM_001370156 NM_001370157 NM_138812
Consensus coding sequences : CCDS (NCBI)DYDC1
Gene ExpressionDYDC1 [ NCBI-GEO ]   DYDC1 [ EBI - ARRAY_EXPRESS ]   DYDC1 [ SEEK ]   DYDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)DYDC1 [ Firebrowse - Broad ]
GenevisibleExpression of DYDC1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)143241
GTEX Portal (Tissue expression)DYDC1
Human Protein AtlasENSG00000170788-DYDC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWB3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWB3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWB3
PhosPhoSitePlusQ8WWB3
Domains : Interpro (EBI)Dpy-30_motif    Sdc1/DPY30   
Domain families : Pfam (Sanger)Dpy-30 (PF05186)   
Domain families : Pfam (NCBI)pfam05186   
Conserved Domain (NCBI)DYDC1
SuperfamilyQ8WWB3
AlphaFold pdb e-kbQ8WWB3   
Human Protein Atlas [tissue]ENSG00000170788-DYDC1 [tissue]
HPRD14062
Protein Interaction databases
DIP (DOE-UCLA)Q8WWB3
IntAct (EBI)Q8WWB3
BioGRIDDYDC1
STRING (EMBL)DYDC1
ZODIACDYDC1
Ontologies - Pathways
QuickGOQ8WWB3
Ontology : AmiGOchromosome, telomeric region  protein binding  chromatin silencing at telomere  MLL3/4 complex  Set1C/COMPASS complex  histone H3-K4 methylation  
Ontology : EGO-EBIchromosome, telomeric region  protein binding  chromatin silencing at telomere  MLL3/4 complex  Set1C/COMPASS complex  histone H3-K4 methylation  
NDEx NetworkDYDC1
Atlas of Cancer Signalling NetworkDYDC1
Wikipedia pathwaysDYDC1
Orthology - Evolution
OrthoDB143241
GeneTree (enSembl)ENSG00000170788
Phylogenetic Trees/Animal Genes : TreeFamDYDC1
Homologs : HomoloGeneDYDC1
Homology/Alignments : Family Browser (UCSC)DYDC1
Gene fusions - Rearrangements
Fusion : QuiverDYDC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDYDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DYDC1
dbVarDYDC1
ClinVarDYDC1
MonarchDYDC1
1000_GenomesDYDC1 
Exome Variant ServerDYDC1
GNOMAD BrowserENSG00000170788
Varsome BrowserDYDC1
ACMGDYDC1 variants
VarityQ8WWB3
Genomic Variants (DGV)DYDC1 [DGVbeta]
DECIPHERDYDC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDYDC1 
Mutations
ICGC Data PortalDYDC1 
TCGA Data PortalDYDC1 
Broad Tumor PortalDYDC1
OASIS PortalDYDC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDYDC1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DDYDC1
Mutations and Diseases : HGMDDYDC1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaDYDC1
DgiDB (Drug Gene Interaction Database)DYDC1
DoCM (Curated mutations)DYDC1
CIViC (Clinical Interpretations of Variants in Cancer)DYDC1
Cancer3DDYDC1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615154   
Orphanet
DisGeNETDYDC1
MedgenDYDC1
Genetic Testing Registry DYDC1
NextProtQ8WWB3 [Medical]
GENETestsDYDC1
Target ValidationDYDC1
Huge Navigator DYDC1 [HugePedia]
ClinGenDYDC1
Clinical trials, drugs, therapy
MyCancerGenomeDYDC1
Protein Interactions : CTDDYDC1
Pharm GKB GenePA134972260
PharosQ8WWB3
Clinical trialDYDC1
Miscellaneous
canSAR (ICR)DYDC1
HarmonizomeDYDC1
DataMed IndexDYDC1
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXDYDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:48:32 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.