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DYDC2 (DPY30 domain containing 2)

Identity

Alias_symbol (synonym)bA36D19.6
MGC16186
Other alias-
HGNC (Hugo) DYDC2
LocusID (NCBI) 84332
Atlas_Id 62686
Location 10q23.1  [Link to chromosome band 10q23]
Location_base_pair Starts at 80356768 and ends at 80368073 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TSPAN14 (10q23.1) / DYDC2 (10q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DYDC2   23468
Cards
Entrez_Gene (NCBI)DYDC2  84332  DPY30 domain containing 2
Aliases
GeneCards (Weizmann)DYDC2
Ensembl hg19 (Hinxton)ENSG00000133665 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133665 [Gene_View]  chr10:80356768-80368073 [Contig_View]  DYDC2 [Vega]
ICGC DataPortalENSG00000133665
TCGA cBioPortalDYDC2
AceView (NCBI)DYDC2
Genatlas (Paris)DYDC2
WikiGenes84332
SOURCE (Princeton)DYDC2
Genetics Home Reference (NIH)DYDC2
Genomic and cartography
GoldenPath hg38 (UCSC)DYDC2  -     chr10:80356768-80368073 +  10q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DYDC2  -     10q23.1   [Description]    (hg19-Feb_2009)
EnsemblDYDC2 - 10q23.1 [CytoView hg19]  DYDC2 - 10q23.1 [CytoView hg38]
Mapping of homologs : NCBIDYDC2 [Mapview hg19]  DYDC2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093378 BC007374 BC018606 BQ229460 DA590784
RefSeq transcript (Entrez)NM_001270041 NM_001270042 NM_032372
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DYDC2
Cluster EST : UnigeneHs.741500 [ NCBI ]
CGAP (NCI)Hs.741500
Alternative Splicing GalleryENSG00000133665
Gene ExpressionDYDC2 [ NCBI-GEO ]   DYDC2 [ EBI - ARRAY_EXPRESS ]   DYDC2 [ SEEK ]   DYDC2 [ MEM ]
Gene Expression Viewer (FireBrowse)DYDC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84332
GTEX Portal (Tissue expression)DYDC2
Human Protein AtlasENSG00000133665-DYDC2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IM9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IM9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IM9
Splice isoforms : SwissVarQ96IM9
PhosPhoSitePlusQ96IM9
Domains : Interpro (EBI)Dpy-30_motif   
Domain families : Pfam (Sanger)Dpy-30 (PF05186)   
Domain families : Pfam (NCBI)pfam05186   
Conserved Domain (NCBI)DYDC2
DMDM Disease mutations84332
Blocks (Seattle)DYDC2
SuperfamilyQ96IM9
Human Protein Atlas [tissue]ENSG00000133665-DYDC2 [tissue]
Peptide AtlasQ96IM9
HPRD11311
IPIIPI00641962   IPI00642435   IPI00063679   
Protein Interaction databases
DIP (DOE-UCLA)Q96IM9
IntAct (EBI)Q96IM9
FunCoupENSG00000133665
BioGRIDDYDC2
STRING (EMBL)DYDC2
ZODIACDYDC2
Ontologies - Pathways
QuickGOQ96IM9
Ontology : AmiGOchromosome, telomeric region  chromatin silencing at telomere  histone methyltransferase activity (H3-K4 specific)  Set1C/COMPASS complex  histone H3-K4 methylation  
Ontology : EGO-EBIchromosome, telomeric region  chromatin silencing at telomere  histone methyltransferase activity (H3-K4 specific)  Set1C/COMPASS complex  histone H3-K4 methylation  
NDEx NetworkDYDC2
Atlas of Cancer Signalling NetworkDYDC2
Wikipedia pathwaysDYDC2
Orthology - Evolution
OrthoDB84332
GeneTree (enSembl)ENSG00000133665
Phylogenetic Trees/Animal Genes : TreeFamDYDC2
HOVERGENQ96IM9
HOGENOMQ96IM9
Homologs : HomoloGeneDYDC2
Homology/Alignments : Family Browser (UCSC)DYDC2
Gene fusions - Rearrangements
Fusion: Tumor Portal DYDC2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDYDC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DYDC2
dbVarDYDC2
ClinVarDYDC2
1000_GenomesDYDC2 
Exome Variant ServerDYDC2
ExAC (Exome Aggregation Consortium)ENSG00000133665
GNOMAD BrowserENSG00000133665
Genetic variants : HAPMAP84332
Genomic Variants (DGV)DYDC2 [DGVbeta]
DECIPHERDYDC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDYDC2 
Mutations
ICGC Data PortalDYDC2 
TCGA Data PortalDYDC2 
Broad Tumor PortalDYDC2
OASIS PortalDYDC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDYDC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDYDC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DYDC2
DgiDB (Drug Gene Interaction Database)DYDC2
DoCM (Curated mutations)DYDC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DYDC2 (select a term)
intoGenDYDC2
Cancer3DDYDC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDYDC2
Genetic Testing Registry DYDC2
NextProtQ96IM9 [Medical]
TSGene84332
GENETestsDYDC2
Target ValidationDYDC2
Huge Navigator DYDC2 [HugePedia]
snp3D : Map Gene to Disease84332
BioCentury BCIQDYDC2
ClinGenDYDC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84332
Chemical/Pharm GKB GenePA134988160
Clinical trialDYDC2
Miscellaneous
canSAR (ICR)DYDC2 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDYDC2
EVEXDYDC2
GoPubMedDYDC2
iHOPDYDC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Nov 9 11:45:18 CET 2017

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