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DYM (dymeclin)

Identity

Alias_symbol (synonym)FLJ20071
DMC
SMC
Other alias
HGNC (Hugo) DYM
LocusID (NCBI) 54808
Atlas_Id 62687
Location 18q21.1  [Link to chromosome band 18q21]
Location_base_pair Starts at 46570172 and ends at 46987079 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DAZAP1 (19p13.3) / DYM (18q21.1)DYM (18q21.1) / C10orf105 (10q22.1)DYM (18q21.1) / CTIF (18q21.1)
DYM (18q21.1) / CYP19A1 (15q21.2)DYM (18q21.1) / DAZAP1 (19p13.3)DYM (18q21.1) / MBD2 (18q21.2)
DYM (18q21.1) / MYO5B (18q21.1)DYM (18q21.1) / SLC14A2 (18q12.3)DYM (18q21.1) / TMC7 (16p12.3)
EGFR (7p11.2) / DYM (18q21.1)MYO5B (18q21.1) / DYM (18q21.1)SMAD7 (18q21.1) / DYM (18q21.1)
TNPO3 (7q32.1) / DYM (18q21.1)DYM MYO5BDYM CTIF
DYM SLC14A2DYM TMC7MYO5B DYM
SMAD7 DYMEGFR DYMTNPO3 DYM

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DYM   21317
Cards
Entrez_Gene (NCBI)DYM  54808  dymeclin
AliasesDMC; SMC
GeneCards (Weizmann)DYM
Ensembl hg19 (Hinxton)ENSG00000141627 [Gene_View]  chr18:46570172-46987079 [Contig_View]  DYM [Vega]
Ensembl hg38 (Hinxton)ENSG00000141627 [Gene_View]  chr18:46570172-46987079 [Contig_View]  DYM [Vega]
ICGC DataPortalENSG00000141627
TCGA cBioPortalDYM
AceView (NCBI)DYM
Genatlas (Paris)DYM
WikiGenes54808
SOURCE (Princeton)DYM
Genetics Home Reference (NIH)DYM
Genomic and cartography
GoldenPath hg19 (UCSC)DYM  -     chr18:46570172-46987079 -  18q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)DYM  -     18q21.1   [Description]    (hg38-Dec_2013)
EnsemblDYM - 18q21.1 [CytoView hg19]  DYM - 18q21.1 [CytoView hg38]
Mapping of homologs : NCBIDYM [Mapview hg19]  DYM [Mapview hg38]
OMIM223800   607326   607461   
Gene and transcription
Genbank (Entrez)AK000078 AK074611 AK091256 AK225205 AK291303
RefSeq transcript (Entrez)NM_017653
RefSeq genomic (Entrez)NC_000018 NC_018929 NG_009239 NT_010966 NW_004929410
Consensus coding sequences : CCDS (NCBI)DYM
Cluster EST : UnigeneHs.162996 [ NCBI ]
CGAP (NCI)Hs.162996
Alternative Splicing GalleryENSG00000141627
Gene ExpressionDYM [ NCBI-GEO ]   DYM [ EBI - ARRAY_EXPRESS ]   DYM [ SEEK ]   DYM [ MEM ]
Gene Expression Viewer (FireBrowse)DYM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54808
GTEX Portal (Tissue expression)DYM
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTS9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTS9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTS9
Splice isoforms : SwissVarQ7RTS9
PhosPhoSitePlusQ7RTS9
Domains : Interpro (EBI)Dymeclin   
Domain families : Pfam (Sanger)Dymeclin (PF09742)   
Domain families : Pfam (NCBI)pfam09742   
Conserved Domain (NCBI)DYM
DMDM Disease mutations54808
Blocks (Seattle)DYM
SuperfamilyQ7RTS9
Human Protein AtlasENSG00000141627
Peptide AtlasQ7RTS9
HPRD08469
IPIIPI00296211   IPI00921973   IPI00853555   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTS9
IntAct (EBI)Q7RTS9
FunCoupENSG00000141627
BioGRIDDYM
STRING (EMBL)DYM
ZODIACDYM
Ontologies - Pathways
QuickGOQ7RTS9
Ontology : AmiGOprotein binding  cytoplasm  Golgi apparatus  Golgi organization  enzyme binding  bone development  
Ontology : EGO-EBIprotein binding  cytoplasm  Golgi apparatus  Golgi organization  enzyme binding  bone development  
NDEx NetworkDYM
Atlas of Cancer Signalling NetworkDYM
Wikipedia pathwaysDYM
Orthology - Evolution
OrthoDB54808
GeneTree (enSembl)ENSG00000141627
Phylogenetic Trees/Animal Genes : TreeFamDYM
HOVERGENQ7RTS9
HOGENOMQ7RTS9
Homologs : HomoloGeneDYM
Homology/Alignments : Family Browser (UCSC)DYM
Gene fusions - Rearrangements
Fusion: TCGADYM MYO5B
Fusion: TCGADYM CTIF
Fusion: TCGADYM SLC14A2
Fusion: TCGADYM TMC7
Fusion: TCGAMYO5B DYM
Fusion: TCGASMAD7 DYM
Fusion: TCGAEGFR DYM
Fusion: TCGATNPO3 DYM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDYM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DYM
dbVarDYM
ClinVarDYM
1000_GenomesDYM 
Exome Variant ServerDYM
ExAC (Exome Aggregation Consortium)DYM (select the gene name)
Genetic variants : HAPMAP54808
Genomic Variants (DGV)DYM [DGVbeta]
DECIPHER (Syndromes)18:46570172-46987079  ENSG00000141627
CONAN: Copy Number AnalysisDYM 
Mutations
ICGC Data PortalDYM 
TCGA Data PortalDYM 
Broad Tumor PortalDYM
OASIS PortalDYM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDYM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDYM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DYM
DgiDB (Drug Gene Interaction Database)DYM
DoCM (Curated mutations)DYM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DYM (select a term)
intoGenDYM
Cancer3DDYM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM223800    607326    607461   
Orphanet473    18019   
MedgenDYM
Genetic Testing Registry DYM
NextProtQ7RTS9 [Medical]
TSGene54808
GENETestsDYM
Huge Navigator DYM [HugePedia]
snp3D : Map Gene to Disease54808
BioCentury BCIQDYM
ClinGenDYM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54808
Chemical/Pharm GKB GenePA134879547
Clinical trialDYM
Miscellaneous
canSAR (ICR)DYM (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDYM
EVEXDYM
GoPubMedDYM
iHOPDYM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:02:23 CET 2017

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