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DYNLT3 (dynein light chain Tctex-type 3)

Identity

Alias_namesTCTE1L
t-complex-associated-testis-expressed 1-like
Alias_symbol (synonym)TCTEX1L
Other aliasRP3
HGNC (Hugo) DYNLT3
LocusID (NCBI) 6990
Atlas_Id 62695
Location Xp11.4  [Link to chromosome band Xp11]
Location_base_pair Starts at 37838836 and ends at 37847636 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DYNLT3 (Xp11.4) / U2AF2 (19q13.42)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DYNLT3   11694
Cards
Entrez_Gene (NCBI)DYNLT3  6990  dynein light chain Tctex-type 3
AliasesRP3; TCTE1L; TCTEX1L
GeneCards (Weizmann)DYNLT3
Ensembl hg19 (Hinxton)ENSG00000165169 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165169 [Gene_View]  chrX:37838836-37847636 [Contig_View]  DYNLT3 [Vega]
ICGC DataPortalENSG00000165169
TCGA cBioPortalDYNLT3
AceView (NCBI)DYNLT3
Genatlas (Paris)DYNLT3
WikiGenes6990
SOURCE (Princeton)DYNLT3
Genetics Home Reference (NIH)DYNLT3
Genomic and cartography
GoldenPath hg38 (UCSC)DYNLT3  -     chrX:37838836-37847636 -  Xp11.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DYNLT3  -     Xp11.4   [Description]    (hg19-Feb_2009)
EnsemblDYNLT3 - Xp11.4 [CytoView hg19]  DYNLT3 - Xp11.4 [CytoView hg38]
Mapping of homologs : NCBIDYNLT3 [Mapview hg19]  DYNLT3 [Mapview hg38]
OMIM300302   
Gene and transcription
Genbank (Entrez)AK311851 BC000968 CR450320 CR542213 DA342302
RefSeq transcript (Entrez)NM_006520
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DYNLT3
Cluster EST : UnigeneHs.446392 [ NCBI ]
CGAP (NCI)Hs.446392
Alternative Splicing GalleryENSG00000165169
Gene ExpressionDYNLT3 [ NCBI-GEO ]   DYNLT3 [ EBI - ARRAY_EXPRESS ]   DYNLT3 [ SEEK ]   DYNLT3 [ MEM ]
Gene Expression Viewer (FireBrowse)DYNLT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6990
GTEX Portal (Tissue expression)DYNLT3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51808   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51808  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51808
Splice isoforms : SwissVarP51808
PhosPhoSitePlusP51808
Domains : Interpro (EBI)Tctex   
Domain families : Pfam (Sanger)Tctex-1 (PF03645)   
Domain families : Pfam (NCBI)pfam03645   
Conserved Domain (NCBI)DYNLT3
DMDM Disease mutations6990
Blocks (Seattle)DYNLT3
SuperfamilyP51808
Human Protein AtlasENSG00000165169
Peptide AtlasP51808
HPRD02249
IPIIPI00020885   IPI00644278   IPI00639982   
Protein Interaction databases
DIP (DOE-UCLA)P51808
IntAct (EBI)P51808
FunCoupENSG00000165169
BioGRIDDYNLT3
STRING (EMBL)DYNLT3
ZODIACDYNLT3
Ontologies - Pathways
QuickGOP51808
Ontology : AmiGOkinetochore  condensed chromosome kinetochore  motor activity  protein binding  nucleus  cytoplasm  cytoplasmic dynein complex  microtubule  transport  cell cycle  regulation of mitotic cell cycle  identical protein binding  cell division  
Ontology : EGO-EBIkinetochore  condensed chromosome kinetochore  motor activity  protein binding  nucleus  cytoplasm  cytoplasmic dynein complex  microtubule  transport  cell cycle  regulation of mitotic cell cycle  identical protein binding  cell division  
NDEx NetworkDYNLT3
Atlas of Cancer Signalling NetworkDYNLT3
Wikipedia pathwaysDYNLT3
Orthology - Evolution
OrthoDB6990
GeneTree (enSembl)ENSG00000165169
Phylogenetic Trees/Animal Genes : TreeFamDYNLT3
HOVERGENP51808
HOGENOMP51808
Homologs : HomoloGeneDYNLT3
Homology/Alignments : Family Browser (UCSC)DYNLT3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDYNLT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DYNLT3
dbVarDYNLT3
ClinVarDYNLT3
1000_GenomesDYNLT3 
Exome Variant ServerDYNLT3
ExAC (Exome Aggregation Consortium)DYNLT3 (select the gene name)
Genetic variants : HAPMAP6990
Genomic Variants (DGV)DYNLT3 [DGVbeta]
DECIPHERDYNLT3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDYNLT3 
Mutations
ICGC Data PortalDYNLT3 
TCGA Data PortalDYNLT3 
Broad Tumor PortalDYNLT3
OASIS PortalDYNLT3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDYNLT3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDYNLT3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch DYNLT3
DgiDB (Drug Gene Interaction Database)DYNLT3
DoCM (Curated mutations)DYNLT3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DYNLT3 (select a term)
intoGenDYNLT3
Cancer3DDYNLT3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300302   
Orphanet
MedgenDYNLT3
Genetic Testing Registry DYNLT3
NextProtP51808 [Medical]
TSGene6990
GENETestsDYNLT3
Target ValidationDYNLT3
Huge Navigator DYNLT3 [HugePedia]
snp3D : Map Gene to Disease6990
BioCentury BCIQDYNLT3
ClinGenDYNLT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6990
Chemical/Pharm GKB GenePA36414
Clinical trialDYNLT3
Miscellaneous
canSAR (ICR)DYNLT3 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDYNLT3
EVEXDYNLT3
GoPubMedDYNLT3
iHOPDYNLT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:06:46 CEST 2017

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