Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

DYNLT3 (dynein light chain Tctex-type 3)

Identity

Alias (NCBI)RP3
TCTE1L
TCTEX1L
HGNC (Hugo) DYNLT3
HGNC Alias symbTCTEX1L
HGNC Previous nameTCTE1L
HGNC Previous namet-complex-associated-testis-expressed 1-like
LocusID (NCBI) 6990
Atlas_Id 62695
Location Xp11.4  [Link to chromosome band Xp11]
Location_base_pair Starts at 37838836 and ends at 37847571 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DYNLT3 (Xp11.4) / U2AF2 (19q13.42)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)DYNLT3   11694
Cards
Entrez_Gene (NCBI)DYNLT3    dynein light chain Tctex-type 3
AliasesRP3; TCTE1L; TCTEX1L
GeneCards (Weizmann)DYNLT3
Ensembl hg19 (Hinxton)ENSG00000165169 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165169 [Gene_View]  ENSG00000165169 [Sequence]  chrX:37838836-37847571 [Contig_View]  DYNLT3 [Vega]
ICGC DataPortalENSG00000165169
TCGA cBioPortalDYNLT3
AceView (NCBI)DYNLT3
Genatlas (Paris)DYNLT3
SOURCE (Princeton)DYNLT3
Genetics Home Reference (NIH)DYNLT3
Genomic and cartography
GoldenPath hg38 (UCSC)DYNLT3  -     chrX:37838836-37847571 -  Xp11.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DYNLT3  -     Xp11.4   [Description]    (hg19-Feb_2009)
GoldenPathDYNLT3 - Xp11.4 [CytoView hg19]  DYNLT3 - Xp11.4 [CytoView hg38]
ImmunoBaseENSG00000165169
Genome Data Viewer NCBIDYNLT3 [Mapview hg19]  
OMIM300302   
Gene and transcription
Genbank (Entrez)AK311851 BC000968 CR450320 CR542213 DA342302
RefSeq transcript (Entrez)NM_006520
Consensus coding sequences : CCDS (NCBI)DYNLT3
Gene ExpressionDYNLT3 [ NCBI-GEO ]   DYNLT3 [ EBI - ARRAY_EXPRESS ]   DYNLT3 [ SEEK ]   DYNLT3 [ MEM ]
Gene Expression Viewer (FireBrowse)DYNLT3 [ Firebrowse - Broad ]
GenevisibleExpression of DYNLT3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6990
GTEX Portal (Tissue expression)DYNLT3
Human Protein AtlasENSG00000165169-DYNLT3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51808   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51808  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51808
PhosPhoSitePlusP51808
Domains : Interpro (EBI)Tctex-1-like    Tctex-1-like_sf   
Domain families : Pfam (Sanger)Tctex-1 (PF03645)   
Domain families : Pfam (NCBI)pfam03645   
Conserved Domain (NCBI)DYNLT3
SuperfamilyP51808
AlphaFold pdb e-kbP51808   
Human Protein Atlas [tissue]ENSG00000165169-DYNLT3 [tissue]
HPRD02249
Protein Interaction databases
DIP (DOE-UCLA)P51808
IntAct (EBI)P51808
BioGRIDDYNLT3
STRING (EMBL)DYNLT3
ZODIACDYNLT3
Ontologies - Pathways
QuickGOP51808
Ontology : AmiGOkinetochore  protein binding  nucleus  cytoplasmic dynein complex  cell cycle  regulation of mitotic cell cycle  identical protein binding  positive regulation of mitotic cell cycle  cell division  mitotic spindle astral microtubule  
Ontology : EGO-EBIkinetochore  protein binding  nucleus  cytoplasmic dynein complex  cell cycle  regulation of mitotic cell cycle  identical protein binding  positive regulation of mitotic cell cycle  cell division  mitotic spindle astral microtubule  
NDEx NetworkDYNLT3
Atlas of Cancer Signalling NetworkDYNLT3
Wikipedia pathwaysDYNLT3
Orthology - Evolution
OrthoDB6990
GeneTree (enSembl)ENSG00000165169
Phylogenetic Trees/Animal Genes : TreeFamDYNLT3
Homologs : HomoloGeneDYNLT3
Homology/Alignments : Family Browser (UCSC)DYNLT3
Gene fusions - Rearrangements
Fusion : QuiverDYNLT3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDYNLT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DYNLT3
dbVarDYNLT3
ClinVarDYNLT3
MonarchDYNLT3
1000_GenomesDYNLT3 
Exome Variant ServerDYNLT3
GNOMAD BrowserENSG00000165169
Varsome BrowserDYNLT3
ACMGDYNLT3 variants
VarityP51808
Genomic Variants (DGV)DYNLT3 [DGVbeta]
DECIPHERDYNLT3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDYNLT3 
Mutations
ICGC Data PortalDYNLT3 
TCGA Data PortalDYNLT3 
Broad Tumor PortalDYNLT3
OASIS PortalDYNLT3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDYNLT3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DDYNLT3
Mutations and Diseases : HGMDDYNLT3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaDYNLT3
DgiDB (Drug Gene Interaction Database)DYNLT3
DoCM (Curated mutations)DYNLT3
CIViC (Clinical Interpretations of Variants in Cancer)DYNLT3
Cancer3DDYNLT3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300302   
Orphanet
DisGeNETDYNLT3
MedgenDYNLT3
Genetic Testing Registry DYNLT3
NextProtP51808 [Medical]
GENETestsDYNLT3
Target ValidationDYNLT3
Huge Navigator DYNLT3 [HugePedia]
ClinGenDYNLT3
Clinical trials, drugs, therapy
MyCancerGenomeDYNLT3
Protein Interactions : CTDDYNLT3
Pharm GKB GenePA36414
PharosP51808
Clinical trialDYNLT3
Miscellaneous
canSAR (ICR)DYNLT3
HarmonizomeDYNLT3
DataMed IndexDYNLT3
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXDYNLT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:48:33 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.