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DZANK1 (double zinc ribbon and ankyrin repeat domains 1)

Identity

Alias_namesC20orf84
C20orf12
chromosome 20 open reading frame 12
Alias_symbol (synonym)FLJ10600
dJ568F9.2
FLJ30892
bA189K21.8
ANKRD64
Other aliasbA189K21.1
HGNC (Hugo) DZANK1
LocusID (NCBI) 55184
Atlas_Id 62698
Location 20p11.23  [Link to chromosome band 20p11]
Location_base_pair Starts at 18383367 and ends at 18467185 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DSTN (20p12.1) / DZANK1 (20p11.23)DZANK1 (20p11.23) / DTD1 (20p11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DZANK1   15858
Cards
Entrez_Gene (NCBI)DZANK1  55184  double zinc ribbon and ankyrin repeat domains 1
AliasesANKRD64; C20orf12; C20orf84; bA189K21.1; 
bA189K21.8; dJ568F9.2
GeneCards (Weizmann)DZANK1
Ensembl hg19 (Hinxton)ENSG00000089091 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000089091 [Gene_View]  chr20:18383367-18467185 [Contig_View]  DZANK1 [Vega]
ICGC DataPortalENSG00000089091
TCGA cBioPortalDZANK1
AceView (NCBI)DZANK1
Genatlas (Paris)DZANK1
WikiGenes55184
SOURCE (Princeton)DZANK1
Genetics Home Reference (NIH)DZANK1
Genomic and cartography
GoldenPath hg38 (UCSC)DZANK1  -     chr20:18383367-18467185 -  20p11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DZANK1  -     20p11.23   [Description]    (hg19-Feb_2009)
EnsemblDZANK1 - 20p11.23 [CytoView hg19]  DZANK1 - 20p11.23 [CytoView hg38]
Mapping of homologs : NCBIDZANK1 [Mapview hg19]  DZANK1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001462 AK026306 AK055544 AK131451 AK295073
RefSeq transcript (Entrez)NM_001099407 NM_018152
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DZANK1
Cluster EST : UnigeneHs.472225 [ NCBI ]
CGAP (NCI)Hs.472225
Alternative Splicing GalleryENSG00000089091
Gene ExpressionDZANK1 [ NCBI-GEO ]   DZANK1 [ EBI - ARRAY_EXPRESS ]   DZANK1 [ SEEK ]   DZANK1 [ MEM ]
Gene Expression Viewer (FireBrowse)DZANK1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55184
GTEX Portal (Tissue expression)DZANK1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVP4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVP4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVP4
Splice isoforms : SwissVarQ9NVP4
PhosPhoSitePlusQ9NVP4
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)   
Domains : Interpro (EBI)Ankyrin_rpt-contain_dom    DZR    Fn3_assoc_repeat   
Domain families : Pfam (Sanger)DZR (PF12773)    Fn3_assoc (PF13287)   
Domain families : Pfam (NCBI)pfam12773    pfam13287   
Conserved Domain (NCBI)DZANK1
DMDM Disease mutations55184
Blocks (Seattle)DZANK1
SuperfamilyQ9NVP4
Human Protein AtlasENSG00000089091
Peptide AtlasQ9NVP4
HPRD12742
IPIIPI00514911   IPI00472239   IPI00744796   IPI00470914   IPI01008837   IPI00879073   IPI00922098   IPI00749404   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVP4
IntAct (EBI)Q9NVP4
FunCoupENSG00000089091
BioGRIDDZANK1
STRING (EMBL)DZANK1
ZODIACDZANK1
Ontologies - Pathways
QuickGOQ9NVP4
Ontology : AmiGOmetal ion binding  
Ontology : EGO-EBImetal ion binding  
NDEx NetworkDZANK1
Atlas of Cancer Signalling NetworkDZANK1
Wikipedia pathwaysDZANK1
Orthology - Evolution
OrthoDB55184
GeneTree (enSembl)ENSG00000089091
Phylogenetic Trees/Animal Genes : TreeFamDZANK1
HOVERGENQ9NVP4
HOGENOMQ9NVP4
Homologs : HomoloGeneDZANK1
Homology/Alignments : Family Browser (UCSC)DZANK1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDZANK1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DZANK1
dbVarDZANK1
ClinVarDZANK1
1000_GenomesDZANK1 
Exome Variant ServerDZANK1
ExAC (Exome Aggregation Consortium)DZANK1 (select the gene name)
Genetic variants : HAPMAP55184
Genomic Variants (DGV)DZANK1 [DGVbeta]
DECIPHERDZANK1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDZANK1 
Mutations
ICGC Data PortalDZANK1 
TCGA Data PortalDZANK1 
Broad Tumor PortalDZANK1
OASIS PortalDZANK1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDZANK1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDZANK1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch DZANK1
DgiDB (Drug Gene Interaction Database)DZANK1
DoCM (Curated mutations)DZANK1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DZANK1 (select a term)
intoGenDZANK1
Cancer3DDZANK1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenDZANK1
Genetic Testing Registry DZANK1
NextProtQ9NVP4 [Medical]
TSGene55184
GENETestsDZANK1
Target ValidationDZANK1
Huge Navigator DZANK1 [HugePedia]
snp3D : Map Gene to Disease55184
BioCentury BCIQDZANK1
ClinGenDZANK1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55184
Chemical/Pharm GKB GenePA25660
Clinical trialDZANK1
Miscellaneous
canSAR (ICR)DZANK1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDZANK1
EVEXDZANK1
GoPubMedDZANK1
iHOPDZANK1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:46:40 CEST 2017

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