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DZIP3 (DAZ interacting zinc finger protein 3)

Identity

Other aliasPPP1R66
UURF2
hRUL138
HGNC (Hugo) DZIP3
LocusID (NCBI) 9666
Atlas_Id 56754
Location 3q13.13  [Link to chromosome band 3q13]
Location_base_pair Starts at 108589490 and ends at 108694846 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GALNT18 (11p15.3) / DZIP3 (3q13.13)PTMA (2q37.1) / DZIP3 (3q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)DZIP3   30938
Cards
Entrez_Gene (NCBI)DZIP3  9666  DAZ interacting zinc finger protein 3
AliasesPPP1R66; UURF2; hRUL138
GeneCards (Weizmann)DZIP3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:108589490-108694846 [Contig_View]  DZIP3 [Vega]
TCGA cBioPortalDZIP3
AceView (NCBI)DZIP3
Genatlas (Paris)DZIP3
WikiGenes9666
SOURCE (Princeton)DZIP3
Genetics Home Reference (NIH)DZIP3
Genomic and cartography
GoldenPath hg38 (UCSC)DZIP3  -     chr3:108589490-108694846 +  3q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)DZIP3  -     3q13.13   [Description]    (hg19-Feb_2009)
EnsemblDZIP3 - 3q13.13 [CytoView hg19]  DZIP3 - 3q13.13 [CytoView hg38]
Mapping of homologs : NCBIDZIP3 [Mapview hg19]  DZIP3 [Mapview hg38]
OMIM608672   
Gene and transcription
Genbank (Entrez)AB014575 AF279370 AK023138 AK023389 AK294967
RefSeq transcript (Entrez)NM_014648
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)DZIP3
Cluster EST : UnigeneHs.409210 [ NCBI ]
CGAP (NCI)Hs.409210
Gene ExpressionDZIP3 [ NCBI-GEO ]   DZIP3 [ EBI - ARRAY_EXPRESS ]   DZIP3 [ SEEK ]   DZIP3 [ MEM ]
Gene Expression Viewer (FireBrowse)DZIP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9666
GTEX Portal (Tissue expression)DZIP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86Y13   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86Y13  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86Y13
Splice isoforms : SwissVarQ86Y13
PhosPhoSitePlusQ86Y13
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)DZIP3    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)DZIP3
DMDM Disease mutations9666
Blocks (Seattle)DZIP3
SuperfamilyQ86Y13
Peptide AtlasQ86Y13
IPIIPI00452463   IPI00945954   IPI00452465   IPI00945646   IPI00945010   
Protein Interaction databases
DIP (DOE-UCLA)Q86Y13
IntAct (EBI)Q86Y13
BioGRIDDZIP3
STRING (EMBL)DZIP3
ZODIACDZIP3
Ontologies - Pathways
QuickGOQ86Y13
Ontology : AmiGOprotein polyubiquitination  Hrd1p ubiquitin ligase complex  RNA binding  ubiquitin-protein transferase activity  protein binding  cytoplasm  zinc ion binding  phosphatase binding  ubiquitin-dependent ERAD pathway  endoplasmic reticulum unfolded protein response  polyubiquitin binding  Derlin-1 retrotranslocation complex  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  endoplasmic reticulum quality control compartment  unfolded protein binding  ubiquitin protein ligase activity involved in ERAD pathway  ubiquitin-specific protease binding  
Ontology : EGO-EBIprotein polyubiquitination  Hrd1p ubiquitin ligase complex  RNA binding  ubiquitin-protein transferase activity  protein binding  cytoplasm  zinc ion binding  phosphatase binding  ubiquitin-dependent ERAD pathway  endoplasmic reticulum unfolded protein response  polyubiquitin binding  Derlin-1 retrotranslocation complex  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  endoplasmic reticulum quality control compartment  unfolded protein binding  ubiquitin protein ligase activity involved in ERAD pathway  ubiquitin-specific protease binding  
NDEx NetworkDZIP3
Atlas of Cancer Signalling NetworkDZIP3
Wikipedia pathwaysDZIP3
Orthology - Evolution
OrthoDB9666
Phylogenetic Trees/Animal Genes : TreeFamDZIP3
HOVERGENQ86Y13
HOGENOMQ86Y13
Homologs : HomoloGeneDZIP3
Homology/Alignments : Family Browser (UCSC)DZIP3
Gene fusions - Rearrangements
Fusion: Tumor Portal DZIP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerDZIP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)DZIP3
dbVarDZIP3
ClinVarDZIP3
1000_GenomesDZIP3 
Exome Variant ServerDZIP3
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP9666
Genomic Variants (DGV)DZIP3 [DGVbeta]
DECIPHERDZIP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisDZIP3 
Mutations
ICGC Data PortalDZIP3 
TCGA Data PortalDZIP3 
Broad Tumor PortalDZIP3
OASIS PortalDZIP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICDZIP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDDZIP3
BioMutasearch DZIP3
DgiDB (Drug Gene Interaction Database)DZIP3
DoCM (Curated mutations)DZIP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)DZIP3 (select a term)
intoGenDZIP3
Cancer3DDZIP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608672   
Orphanet
MedgenDZIP3
Genetic Testing Registry DZIP3
NextProtQ86Y13 [Medical]
TSGene9666
GENETestsDZIP3
Target ValidationDZIP3
Huge Navigator DZIP3 [HugePedia]
snp3D : Map Gene to Disease9666
BioCentury BCIQDZIP3
ClinGenDZIP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9666
Chemical/Pharm GKB GenePA162384137
Clinical trialDZIP3
Miscellaneous
canSAR (ICR)DZIP3 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineDZIP3
EVEXDZIP3
GoPubMedDZIP3
iHOPDZIP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:48:13 CET 2017

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