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EBF2 (early B-cell factor 2)

Identity

Alias_symbol (synonym)FLJ11500
COE2
Other aliasEBF-2
O/E-3
OE-3
HGNC (Hugo) EBF2
LocusID (NCBI) 64641
Atlas_Id 51297
Location 8p21.2  [Link to chromosome band 8p21]
Location_base_pair Starts at 25841730 and ends at 26045124 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EBF2   19090
Cards
Entrez_Gene (NCBI)EBF2  64641  early B-cell factor 2
AliasesCOE2; EBF-2; O/E-3; OE-3
GeneCards (Weizmann)EBF2
Ensembl hg19 (Hinxton)ENSG00000221818 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221818 [Gene_View]  chr8:25841730-26045124 [Contig_View]  EBF2 [Vega]
ICGC DataPortalENSG00000221818
TCGA cBioPortalEBF2
AceView (NCBI)EBF2
Genatlas (Paris)EBF2
WikiGenes64641
SOURCE (Princeton)EBF2
Genetics Home Reference (NIH)EBF2
Genomic and cartography
GoldenPath hg38 (UCSC)EBF2  -     chr8:25841730-26045124 -  8p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EBF2  -     8p21.2   [Description]    (hg19-Feb_2009)
EnsemblEBF2 - 8p21.2 [CytoView hg19]  EBF2 - 8p21.2 [CytoView hg38]
Mapping of homologs : NCBIEBF2 [Mapview hg19]  EBF2 [Mapview hg38]
OMIM609934   
Gene and transcription
Genbank (Entrez)AI457889 AK001144 AK021562 AK093878 AK304372
RefSeq transcript (Entrez)NM_022659
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EBF2
Cluster EST : UnigeneHs.491292 [ NCBI ]
CGAP (NCI)Hs.491292
Alternative Splicing GalleryENSG00000221818
Gene ExpressionEBF2 [ NCBI-GEO ]   EBF2 [ EBI - ARRAY_EXPRESS ]   EBF2 [ SEEK ]   EBF2 [ MEM ]
Gene Expression Viewer (FireBrowse)EBF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64641
GTEX Portal (Tissue expression)EBF2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HAK2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HAK2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HAK2
Splice isoforms : SwissVarQ9HAK2
PhosPhoSitePlusQ9HAK2
Domaine pattern : Prosite (Expaxy)COE (PS01345)   
Domains : Interpro (EBI)COE_DBD    COE_HLH    Ig-like_fold    Ig_E-set    IPT    Transcription_factor_COE    Transcription_factor_COE_CS   
Domain families : Pfam (Sanger)COE1_DBD (PF16422)    COE1_HLH (PF16423)    TIG (PF01833)   
Domain families : Pfam (NCBI)pfam16422    pfam16423    pfam01833   
Domain families : Smart (EMBL)IPT (SM00429)  
Conserved Domain (NCBI)EBF2
DMDM Disease mutations64641
Blocks (Seattle)EBF2
SuperfamilyQ9HAK2
Human Protein AtlasENSG00000221818
Peptide AtlasQ9HAK2
HPRD16848
IPIIPI00165598   IPI00470442   IPI00980041   
Protein Interaction databases
DIP (DOE-UCLA)Q9HAK2
IntAct (EBI)Q9HAK2
FunCoupENSG00000221818
BioGRIDEBF2
STRING (EMBL)EBF2
ZODIACEBF2
Ontologies - Pathways
QuickGOQ9HAK2
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  cell fate determination  chromatin binding  nucleus  transcription from RNA polymerase II promoter  positive regulation of chromatin binding  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  brown fat cell differentiation  adipose tissue development  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  cell fate determination  chromatin binding  nucleus  transcription from RNA polymerase II promoter  positive regulation of chromatin binding  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  brown fat cell differentiation  adipose tissue development  
NDEx NetworkEBF2
Atlas of Cancer Signalling NetworkEBF2
Wikipedia pathwaysEBF2
Orthology - Evolution
OrthoDB64641
GeneTree (enSembl)ENSG00000221818
Phylogenetic Trees/Animal Genes : TreeFamEBF2
HOVERGENQ9HAK2
HOGENOMQ9HAK2
Homologs : HomoloGeneEBF2
Homology/Alignments : Family Browser (UCSC)EBF2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEBF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EBF2
dbVarEBF2
ClinVarEBF2
1000_GenomesEBF2 
Exome Variant ServerEBF2
ExAC (Exome Aggregation Consortium)EBF2 (select the gene name)
Genetic variants : HAPMAP64641
Genomic Variants (DGV)EBF2 [DGVbeta]
DECIPHEREBF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEBF2 
Mutations
ICGC Data PortalEBF2 
TCGA Data PortalEBF2 
Broad Tumor PortalEBF2
OASIS PortalEBF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEBF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEBF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EBF2
DgiDB (Drug Gene Interaction Database)EBF2
DoCM (Curated mutations)EBF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EBF2 (select a term)
intoGenEBF2
Cancer3DEBF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609934   
Orphanet
MedgenEBF2
Genetic Testing Registry EBF2
NextProtQ9HAK2 [Medical]
TSGene64641
GENETestsEBF2
Target ValidationEBF2
Huge Navigator EBF2 [HugePedia]
snp3D : Map Gene to Disease64641
BioCentury BCIQEBF2
ClinGenEBF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64641
Chemical/Pharm GKB GenePA38794
Clinical trialEBF2
Miscellaneous
canSAR (ICR)EBF2 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEBF2
EVEXEBF2
GoPubMedEBF2
iHOPEBF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:00:06 CEST 2017

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