| Nomenclature |
HGNC (Hugo) | EBF3 19087 |
| Cards |
Entrez_Gene (NCBI) | EBF3 253738 EBF transcription factor 3 |
Aliases | COE3; EBF-3; HADDS; O/E-2; |
| OE-2 |
GeneCards (Weizmann) | EBF3 |
Ensembl hg19 (Hinxton) | ENSG00000108001 [Gene_View] |
Ensembl hg38 (Hinxton) | ENSG00000108001 [Gene_View]  ENSG00000108001 [Sequence] chr10:129835232-129963827 [Contig_View] EBF3 [Vega] |
ICGC DataPortal | ENSG00000108001 |
TCGA cBioPortal | EBF3 |
AceView (NCBI) | EBF3 |
Genatlas (Paris) | EBF3 |
WikiGenes | 253738 |
SOURCE (Princeton) | EBF3 |
Genetics Home Reference (NIH) | EBF3 |
| Genomic and cartography |
GoldenPath hg38 (UCSC) | EBF3 - chr10:129835232-129963827 - 10q26.3 [Description] (hg38-Dec_2013) |
GoldenPath hg19 (UCSC) | EBF3 - 10q26.3 [Description] (hg19-Feb_2009) |
GoldenPath | EBF3 - 10q26.3 [CytoView hg19] EBF3 - 10q26.3 [CytoView hg38] |
ImmunoBase | ENSG00000108001 |
Mapping of homologs : NCBI | EBF3 [Mapview hg19] EBF3 [Mapview hg38] |
OMIM | 607407 617330 |
| Gene and transcription |
Genbank (Entrez) | AA330620 AK055710 AK097335 AK098025 AL713797 |
RefSeq transcript (Entrez) | NM_001005463 |
RefSeq genomic (Entrez) | |
Consensus coding sequences : CCDS (NCBI) | EBF3 |
Cluster EST : Unigene | Hs.591374 [ NCBI ] |
CGAP (NCI) | Hs.591374 |
Alternative Splicing Gallery | ENSG00000108001 |
Gene Expression | EBF3 [ NCBI-GEO ] EBF3 [ EBI - ARRAY_EXPRESS ]
EBF3 [ SEEK ] EBF3 [ MEM ] |
Gene Expression Viewer (FireBrowse) | EBF3 [ Firebrowse - Broad ] |
SOURCE (Princeton) | Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60] |
Genevestigator | Expression in : [tissues]  [cell-lines]  [cancer]  [perturbations]   |
BioGPS (Tissue expression) | 253738 |
GTEX Portal (Tissue expression) | EBF3 |
Human Protein Atlas | ENSG00000108001-EBF3 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
UniProt/SwissProt | Q9H4W6 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
NextProt | Q9H4W6 [Sequence] [Exons] [Medical] [Publications] |
With graphics : InterPro | Q9H4W6 |
Splice isoforms : SwissVar | Q9H4W6 |
PhosPhoSitePlus | Q9H4W6 |
Domaine pattern : Prosite (Expaxy) | COE (PS01345) |
Domains : Interpro (EBI) | COE_DBD COE_DBD_sf COE_HLH COE_IPT HLH_DNA-bd_sf Ig-like_fold Ig_E-set IPT_dom Transcription_factor_COE Transcription_factor_COE_CS |
Domain families : Pfam (Sanger) | COE1_DBD (PF16422) COE1_HLH (PF16423) TIG (PF01833) |
Domain families : Pfam (NCBI) | pfam16422 pfam16423 pfam01833 |
Domain families : Smart (EMBL) | IPT (SM00429) |
Conserved Domain (NCBI) | EBF3 |
DMDM Disease mutations | 253738 |
Blocks (Seattle) | EBF3 |
PDB (RSDB) | 3MUJ 3N50 |
PDB Europe | 3MUJ 3N50 |
PDB (PDBSum) | 3MUJ 3N50 |
PDB (IMB) | 3MUJ 3N50 |
Structural Biology KnowledgeBase | 3MUJ 3N50 |
SCOP (Structural Classification of Proteins) | 3MUJ 3N50 |
CATH (Classification of proteins structures) | 3MUJ 3N50 |
Superfamily | Q9H4W6 |
Human Protein Atlas [tissue] | ENSG00000108001-EBF3 [tissue] |
Peptide Atlas | Q9H4W6 |
HPRD | 16818 |
IPI | IPI00024242 IPI00220430 IPI00514247 |
| Protein Interaction databases |
DIP (DOE-UCLA) | Q9H4W6 |
IntAct (EBI) | Q9H4W6 |
FunCoup | ENSG00000108001 |
BioGRID | EBF3 |
STRING (EMBL) | EBF3 |
ZODIAC | EBF3 |
| Ontologies - Pathways |
QuickGO | Q9H4W6 |
Ontology : AmiGO | RNA polymerase II proximal promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific nucleus nucleus multicellular organism development positive regulation of transcription, DNA-templated positive regulation of transcription by RNA polymerase II metal ion binding protein dimerization activity |
Ontology : EGO-EBI | RNA polymerase II proximal promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific nucleus nucleus multicellular organism development positive regulation of transcription, DNA-templated positive regulation of transcription by RNA polymerase II metal ion binding protein dimerization activity |
NDEx Network | EBF3 |
Atlas of Cancer Signalling Network | EBF3 |
Wikipedia pathways | EBF3 |
| Orthology - Evolution |
OrthoDB | 253738 |
GeneTree (enSembl) | ENSG00000108001 |
Phylogenetic Trees/Animal Genes : TreeFam | EBF3 |
HOGENOM | Q9H4W6 |
Homologs : HomoloGene | EBF3 |
Homology/Alignments : Family Browser (UCSC) | EBF3 |
| Gene fusions - Rearrangements |
Fusion : Quiver | EBF3 |
| Polymorphisms : SNP and Copy number variants |
NCBI Variation Viewer | EBF3 [hg38] |
dbSNP Single Nucleotide Polymorphism (NCBI) | EBF3 |
dbVar | EBF3 |
ClinVar | EBF3 |
1000_Genomes | EBF3 |
Exome Variant Server | EBF3 |
ExAC (Exome Aggregation Consortium) | ENSG00000108001 |
GNOMAD Browser | ENSG00000108001 |
Varsome Browser | EBF3 |
Genetic variants : HAPMAP | 253738 |
Genomic Variants (DGV) | EBF3 [DGVbeta] |
DECIPHER | EBF3 [patients] [syndromes] [variants] [genes] |
CONAN: Copy Number Analysis | EBF3 |
| Mutations |
ICGC Data Portal | EBF3 |
TCGA Data Portal | EBF3 |
Broad Tumor Portal | EBF3 |
OASIS Portal | EBF3 [ Somatic mutations - Copy number] |
Somatic Mutations in Cancer : COSMIC | EBF3 [overview] [genome browser] [tissue] [distribution] |
Somatic Mutations in Cancer : COSMIC3D | EBF3 |
Mutations and Diseases : HGMD | EBF3 |
LOVD (Leiden Open Variation Database) | Whole genome datasets |
LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
BioMuta | search EBF3 |
DgiDB (Drug Gene Interaction Database) | EBF3 |
DoCM (Curated mutations) | EBF3 (select the gene name) |
CIViC (Clinical Interpretations of Variants in Cancer) | EBF3 (select a term) |
intoGen | EBF3 |
Cancer3D | EBF3(select the gene name) |
Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
---|
OMIM | 607407 617330 |
Orphanet | |
DisGeNET | EBF3 |
Medgen | EBF3 |
Genetic Testing Registry | EBF3
|
NextProt | Q9H4W6 [Medical] |
TSGene | 253738 |
GENETests | EBF3 |
Target Validation | EBF3 |
Huge Navigator |
EBF3 [HugePedia] |
snp3D : Map Gene to Disease | 253738 |
BioCentury BCIQ | EBF3 |
ClinGen | EBF3 |
| Clinical trials, drugs, therapy |
---|
Chemical/Protein Interactions : CTD | 253738 |
Chemical/Pharm GKB Gene | PA134972607 |
Clinical trial | EBF3 |
| Miscellaneous |
---|
canSAR (ICR) | EBF3 (select the gene name) |
DataMed Index | EBF3 |
| Probes |
---|
| Litterature |
---|
PubMed | 29 Pubmed reference(s) in Entrez |
GeneRIFs | Gene References Into Functions (Entrez) |
CoreMine | EBF3 |
EVEX | EBF3 |
GoPubMed | EBF3 |
iHOP | EBF3 |