Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

EBF4 (early B-cell factor 4)

Identity

Alias_symbol (synonym)KIAA1442
COE4
RP5-860F19.3
O/E-4
Other alias
HGNC (Hugo) EBF4
LocusID (NCBI) 57593
Atlas_Id 62705
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 2692878 and ends at 2760108 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EBF4 (20p13) / EBF4 (20p13)EBF4 (20p13) / TMC2 (20p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EBF4   29278
Cards
Entrez_Gene (NCBI)EBF4  57593  early B-cell factor 4
AliasesCOE4; O/E-4
GeneCards (Weizmann)EBF4
Ensembl hg19 (Hinxton)ENSG00000088881 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000088881 [Gene_View]  chr20:2692878-2760108 [Contig_View]  EBF4 [Vega]
ICGC DataPortalENSG00000088881
TCGA cBioPortalEBF4
AceView (NCBI)EBF4
Genatlas (Paris)EBF4
WikiGenes57593
SOURCE (Princeton)EBF4
Genetics Home Reference (NIH)EBF4
Genomic and cartography
GoldenPath hg38 (UCSC)EBF4  -     chr20:2692878-2760108 +  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EBF4  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblEBF4 - 20p13 [CytoView hg19]  EBF4 - 20p13 [CytoView hg38]
Mapping of homologs : NCBIEBF4 [Mapview hg19]  EBF4 [Mapview hg38]
OMIM609935   
Gene and transcription
Genbank (Entrez)AB037863 AI859365 BC010557 BC019106 BC037555
RefSeq transcript (Entrez)NM_001110514 NM_020833
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EBF4
Cluster EST : UnigeneHs.471955 [ NCBI ]
CGAP (NCI)Hs.471955
Alternative Splicing GalleryENSG00000088881
Gene ExpressionEBF4 [ NCBI-GEO ]   EBF4 [ EBI - ARRAY_EXPRESS ]   EBF4 [ SEEK ]   EBF4 [ MEM ]
Gene Expression Viewer (FireBrowse)EBF4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57593
GTEX Portal (Tissue expression)EBF4
Human Protein AtlasENSG00000088881-EBF4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQW3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQW3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQW3
Splice isoforms : SwissVarQ9BQW3
PhosPhoSitePlusQ9BQW3
Domaine pattern : Prosite (Expaxy)COE (PS01345)   
Domains : Interpro (EBI)COE_DBD    COE_HLH    Ig-like_fold    Ig_E-set    IPT    Transcription_factor_COE    Transcription_factor_COE_CS   
Domain families : Pfam (Sanger)COE1_DBD (PF16422)    COE1_HLH (PF16423)    TIG (PF01833)   
Domain families : Pfam (NCBI)pfam16422    pfam16423    pfam01833   
Domain families : Smart (EMBL)IPT (SM00429)  
Conserved Domain (NCBI)EBF4
DMDM Disease mutations57593
Blocks (Seattle)EBF4
SuperfamilyQ9BQW3
Human Protein Atlas [tissue]ENSG00000088881-EBF4 [tissue]
Peptide AtlasQ9BQW3
IPIIPI00853002   IPI00215773   IPI01012845   IPI00953697   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQW3
IntAct (EBI)Q9BQW3
FunCoupENSG00000088881
BioGRIDEBF4
STRING (EMBL)EBF4
ZODIACEBF4
Ontologies - Pathways
QuickGOQ9BQW3
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  metal ion binding  
NDEx NetworkEBF4
Atlas of Cancer Signalling NetworkEBF4
Wikipedia pathwaysEBF4
Orthology - Evolution
OrthoDB57593
GeneTree (enSembl)ENSG00000088881
Phylogenetic Trees/Animal Genes : TreeFamEBF4
HOVERGENQ9BQW3
HOGENOMQ9BQW3
Homologs : HomoloGeneEBF4
Homology/Alignments : Family Browser (UCSC)EBF4
Gene fusions - Rearrangements
Tumor Fusion PortalEBF4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEBF4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EBF4
dbVarEBF4
ClinVarEBF4
1000_GenomesEBF4 
Exome Variant ServerEBF4
ExAC (Exome Aggregation Consortium)ENSG00000088881
GNOMAD BrowserENSG00000088881
Genetic variants : HAPMAP57593
Genomic Variants (DGV)EBF4 [DGVbeta]
DECIPHEREBF4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEBF4 
Mutations
ICGC Data PortalEBF4 
TCGA Data PortalEBF4 
Broad Tumor PortalEBF4
OASIS PortalEBF4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDEBF4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EBF4
DgiDB (Drug Gene Interaction Database)EBF4
DoCM (Curated mutations)EBF4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EBF4 (select a term)
intoGenEBF4
Cancer3DEBF4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609935   
Orphanet
DisGeNETEBF4
MedgenEBF4
Genetic Testing Registry EBF4
NextProtQ9BQW3 [Medical]
TSGene57593
GENETestsEBF4
Target ValidationEBF4
Huge Navigator EBF4 [HugePedia]
snp3D : Map Gene to Disease57593
BioCentury BCIQEBF4
ClinGenEBF4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57593
Chemical/Pharm GKB GenePA162384262
Clinical trialEBF4
Miscellaneous
canSAR (ICR)EBF4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEBF4
EVEXEBF4
GoPubMedEBF4
iHOPEBF4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:41:26 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.