Atlas of Genetics and Cytogenetics in Oncology and Haematology


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EBLN1 (endogenous Bornavirus like nucleoprotein 1)

Identity

Alias (NCBI)EBLN-1
HGNC (Hugo) EBLN1
HGNC Alias nameendogenous Borna-like N element 1
LocusID (NCBI) 340900
Atlas_Id 62706
Location 10p12.31  [Link to chromosome band 10p12]
Location_base_pair Starts at 22208814 and ends at 22209983 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)EBLN1   39430
Cards
Entrez_Gene (NCBI)EBLN1    endogenous Bornavirus like nucleoprotein 1
AliasesEBLN-1
GeneCards (Weizmann)EBLN1
Ensembl hg19 (Hinxton)ENSG00000223601 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000223601 [Gene_View]  ENSG00000223601 [Sequence]  chr10:22208814-22209983 [Contig_View]  EBLN1 [Vega]
ICGC DataPortalENSG00000223601
TCGA cBioPortalEBLN1
AceView (NCBI)EBLN1
Genatlas (Paris)EBLN1
SOURCE (Princeton)EBLN1
Genetics Home Reference (NIH)EBLN1
Genomic and cartography
GoldenPath hg38 (UCSC)EBLN1  -     chr10:22208814-22209983 -  10p12.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EBLN1  -     10p12.31   [Description]    (hg19-Feb_2009)
GoldenPathEBLN1 - 10p12.31 [CytoView hg19]  EBLN1 - 10p12.31 [CytoView hg38]
ImmunoBaseENSG00000223601
Genome Data Viewer NCBIEBLN1 [Mapview hg19]  
OMIM613249   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001199938 NM_001394757
Consensus coding sequences : CCDS (NCBI)EBLN1
Gene ExpressionEBLN1 [ NCBI-GEO ]   EBLN1 [ EBI - ARRAY_EXPRESS ]   EBLN1 [ SEEK ]   EBLN1 [ MEM ]
Gene Expression Viewer (FireBrowse)EBLN1 [ Firebrowse - Broad ]
GenevisibleExpression of EBLN1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340900
GTEX Portal (Tissue expression)EBLN1
Human Protein AtlasENSG00000223601-EBLN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CF75   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CF75  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CF75
PhosPhoSitePlusP0CF75
Domains : Interpro (EBI)P40_nucleoprot_BD-vir    P40_nucleoprot_sf_BD-vir    P40_nucleoprot_sub1_BD-vir   
Domain families : Pfam (Sanger)BDV_P40 (PF06407)   
Domain families : Pfam (NCBI)pfam06407   
Conserved Domain (NCBI)EBLN1
SuperfamilyP0CF75
AlphaFold pdb e-kbP0CF75   
Human Protein Atlas [tissue]ENSG00000223601-EBLN1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)P0CF75
IntAct (EBI)P0CF75
BioGRIDEBLN1
STRING (EMBL)EBLN1
ZODIACEBLN1
Ontologies - Pathways
QuickGOP0CF75
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkEBLN1
Atlas of Cancer Signalling NetworkEBLN1
Wikipedia pathwaysEBLN1
Orthology - Evolution
OrthoDB340900
GeneTree (enSembl)ENSG00000223601
Phylogenetic Trees/Animal Genes : TreeFamEBLN1
Homologs : HomoloGeneEBLN1
Homology/Alignments : Family Browser (UCSC)EBLN1
Gene fusions - Rearrangements
Fusion : QuiverEBLN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEBLN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EBLN1
dbVarEBLN1
ClinVarEBLN1
MonarchEBLN1
1000_GenomesEBLN1 
Exome Variant ServerEBLN1
GNOMAD BrowserENSG00000223601
Varsome BrowserEBLN1
ACMGEBLN1 variants
VarityP0CF75
Genomic Variants (DGV)EBLN1 [DGVbeta]
DECIPHEREBLN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEBLN1 
Mutations
ICGC Data PortalEBLN1 
TCGA Data PortalEBLN1 
Broad Tumor PortalEBLN1
OASIS PortalEBLN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEBLN1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DEBLN1
Mutations and Diseases : HGMDEBLN1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaEBLN1
DgiDB (Drug Gene Interaction Database)EBLN1
DoCM (Curated mutations)EBLN1
CIViC (Clinical Interpretations of Variants in Cancer)EBLN1
Cancer3DEBLN1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613249   
Orphanet
DisGeNETEBLN1
MedgenEBLN1
Genetic Testing Registry EBLN1
NextProtP0CF75 [Medical]
GENETestsEBLN1
Target ValidationEBLN1
Huge Navigator EBLN1 [HugePedia]
ClinGenEBLN1
Clinical trials, drugs, therapy
MyCancerGenomeEBLN1
Protein Interactions : CTDEBLN1
Pharm GKB GenePA166049039
PharosP0CF75
Clinical trialEBLN1
Miscellaneous
canSAR (ICR)EBLN1
HarmonizomeEBLN1
DataMed IndexEBLN1
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXEBLN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:48:34 CEST 2021

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