Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

EBLN1 (endogenous Bornavirus-like nucleoprotein 1)

Identity

Other aliasEBLN-1
HGNC (Hugo) EBLN1
LocusID (NCBI) 340900
Atlas_Id 62706
Location 10p12.31  [Link to chromosome band 10p12]
Location_base_pair Starts at 22208814 and ends at 22209983 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EBLN1   39430
Cards
Entrez_Gene (NCBI)EBLN1  340900  endogenous Bornavirus-like nucleoprotein 1
AliasesEBLN-1
GeneCards (Weizmann)EBLN1
Ensembl hg19 (Hinxton)ENSG00000223601 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000223601 [Gene_View]  chr10:22208814-22209983 [Contig_View]  EBLN1 [Vega]
ICGC DataPortalENSG00000223601
TCGA cBioPortalEBLN1
AceView (NCBI)EBLN1
Genatlas (Paris)EBLN1
WikiGenes340900
SOURCE (Princeton)EBLN1
Genetics Home Reference (NIH)EBLN1
Genomic and cartography
GoldenPath hg38 (UCSC)EBLN1  -     chr10:22208814-22209983 -  10p12.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EBLN1  -     10p12.31   [Description]    (hg19-Feb_2009)
EnsemblEBLN1 - 10p12.31 [CytoView hg19]  EBLN1 - 10p12.31 [CytoView hg38]
Mapping of homologs : NCBIEBLN1 [Mapview hg19]  EBLN1 [Mapview hg38]
OMIM613249   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001199938
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EBLN1
Cluster EST : UnigeneHs.450519 [ NCBI ]
CGAP (NCI)Hs.450519
Alternative Splicing GalleryENSG00000223601
Gene ExpressionEBLN1 [ NCBI-GEO ]   EBLN1 [ EBI - ARRAY_EXPRESS ]   EBLN1 [ SEEK ]   EBLN1 [ MEM ]
Gene Expression Viewer (FireBrowse)EBLN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340900
GTEX Portal (Tissue expression)EBLN1
Human Protein AtlasENSG00000223601-EBLN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CF75   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CF75  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CF75
Splice isoforms : SwissVarP0CF75
PhosPhoSitePlusP0CF75
Domains : Interpro (EBI)P40_nucleoprot_BD-vir    P40_nucleoprot_sub1_BD-vir    P40_nucleoprot_sub2_BD-vir   
Domain families : Pfam (Sanger)BDV_P40 (PF06407)   
Domain families : Pfam (NCBI)pfam06407   
Conserved Domain (NCBI)EBLN1
DMDM Disease mutations340900
Blocks (Seattle)EBLN1
SuperfamilyP0CF75
Human Protein Atlas [tissue]ENSG00000223601-EBLN1 [tissue]
Peptide AtlasP0CF75
IPIIPI00887964   
Protein Interaction databases
DIP (DOE-UCLA)P0CF75
IntAct (EBI)P0CF75
FunCoupENSG00000223601
BioGRIDEBLN1
STRING (EMBL)EBLN1
ZODIACEBLN1
Ontologies - Pathways
QuickGOP0CF75
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkEBLN1
Atlas of Cancer Signalling NetworkEBLN1
Wikipedia pathwaysEBLN1
Orthology - Evolution
OrthoDB340900
GeneTree (enSembl)ENSG00000223601
Phylogenetic Trees/Animal Genes : TreeFamEBLN1
HOVERGENP0CF75
HOGENOMP0CF75
Homologs : HomoloGeneEBLN1
Homology/Alignments : Family Browser (UCSC)EBLN1
Gene fusions - Rearrangements
Tumor Fusion PortalEBLN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEBLN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EBLN1
dbVarEBLN1
ClinVarEBLN1
1000_GenomesEBLN1 
Exome Variant ServerEBLN1
ExAC (Exome Aggregation Consortium)ENSG00000223601
GNOMAD BrowserENSG00000223601
Genetic variants : HAPMAP340900
Genomic Variants (DGV)EBLN1 [DGVbeta]
DECIPHEREBLN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEBLN1 
Mutations
ICGC Data PortalEBLN1 
TCGA Data PortalEBLN1 
Broad Tumor PortalEBLN1
OASIS PortalEBLN1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDEBLN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EBLN1
DgiDB (Drug Gene Interaction Database)EBLN1
DoCM (Curated mutations)EBLN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EBLN1 (select a term)
intoGenEBLN1
Cancer3DEBLN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613249   
Orphanet
DisGeNETEBLN1
MedgenEBLN1
Genetic Testing Registry EBLN1
NextProtP0CF75 [Medical]
TSGene340900
GENETestsEBLN1
Target ValidationEBLN1
Huge Navigator EBLN1 [HugePedia]
snp3D : Map Gene to Disease340900
BioCentury BCIQEBLN1
ClinGenEBLN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340900
Chemical/Pharm GKB GenePA166049039
Clinical trialEBLN1
Miscellaneous
canSAR (ICR)EBLN1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEBLN1
EVEXEBLN1
GoPubMedEBLN1
iHOPEBLN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 19:27:10 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.