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EBNA1BP2 (EBNA1 binding protein 2)

Identity

Alias_namesEBNA1-binding protein 2
Alias_symbol (synonym)NOBP
EBP2
P40
Other alias
HGNC (Hugo) EBNA1BP2
LocusID (NCBI) 10969
Atlas_Id 54881
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 43164174 and ends at 43172570 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EBNA1BP2 (1p34.2) / ALB (4q13.3)EBNA1BP2 (1p34.2) / EBNA1BP2 (1p34.2)EBNA1BP2 (1p34.2) / WWOX (16q23.1)
SPCS1 (3p21.1) / EBNA1BP2 (1p34.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EBNA1BP2   15531
Cards
Entrez_Gene (NCBI)EBNA1BP2  10969  EBNA1 binding protein 2
AliasesEBP2; NOBP; P40
GeneCards (Weizmann)EBNA1BP2
Ensembl hg19 (Hinxton)ENSG00000117395 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117395 [Gene_View]  chr1:43164174-43172570 [Contig_View]  EBNA1BP2 [Vega]
ICGC DataPortalENSG00000117395
TCGA cBioPortalEBNA1BP2
AceView (NCBI)EBNA1BP2
Genatlas (Paris)EBNA1BP2
WikiGenes10969
SOURCE (Princeton)EBNA1BP2
Genetics Home Reference (NIH)EBNA1BP2
Genomic and cartography
GoldenPath hg38 (UCSC)EBNA1BP2  -     chr1:43164174-43172570 -  1p34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EBNA1BP2  -     1p34.2   [Description]    (hg19-Feb_2009)
EnsemblEBNA1BP2 - 1p34.2 [CytoView hg19]  EBNA1BP2 - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBIEBNA1BP2 [Mapview hg19]  EBNA1BP2 [Mapview hg38]
OMIM614443   
Gene and transcription
Genbank (Entrez)AB451256 AB451381 AK223455 AK295006 AK299476
RefSeq transcript (Entrez)NM_001159936 NM_006824
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EBNA1BP2
Cluster EST : UnigeneHs.346868 [ NCBI ]
CGAP (NCI)Hs.346868
Alternative Splicing GalleryENSG00000117395
Gene ExpressionEBNA1BP2 [ NCBI-GEO ]   EBNA1BP2 [ EBI - ARRAY_EXPRESS ]   EBNA1BP2 [ SEEK ]   EBNA1BP2 [ MEM ]
Gene Expression Viewer (FireBrowse)EBNA1BP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10969
GTEX Portal (Tissue expression)EBNA1BP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99848   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99848  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99848
Splice isoforms : SwissVarQ99848
PhosPhoSitePlusQ99848
Domains : Interpro (EBI)Ebp2   
Domain families : Pfam (Sanger)Ebp2 (PF05890)   
Domain families : Pfam (NCBI)pfam05890   
Conserved Domain (NCBI)EBNA1BP2
DMDM Disease mutations10969
Blocks (Seattle)EBNA1BP2
SuperfamilyQ99848
Human Protein AtlasENSG00000117395
Peptide AtlasQ99848
HPRD16849
IPIIPI00745955   IPI00908409   IPI00930241   
Protein Interaction databases
DIP (DOE-UCLA)Q99848
IntAct (EBI)Q99848
FunCoupENSG00000117395
BioGRIDEBNA1BP2
STRING (EMBL)EBNA1BP2
ZODIACEBNA1BP2
Ontologies - Pathways
QuickGOQ99848
Ontology : AmiGORNA binding  nucleus  nucleolus  nucleolus  rRNA processing  preribosome, large subunit precursor  nuclear periphery  ribosomal large subunit biogenesis  
Ontology : EGO-EBIRNA binding  nucleus  nucleolus  nucleolus  rRNA processing  preribosome, large subunit precursor  nuclear periphery  ribosomal large subunit biogenesis  
NDEx NetworkEBNA1BP2
Atlas of Cancer Signalling NetworkEBNA1BP2
Wikipedia pathwaysEBNA1BP2
Orthology - Evolution
OrthoDB10969
GeneTree (enSembl)ENSG00000117395
Phylogenetic Trees/Animal Genes : TreeFamEBNA1BP2
HOVERGENQ99848
HOGENOMQ99848
Homologs : HomoloGeneEBNA1BP2
Homology/Alignments : Family Browser (UCSC)EBNA1BP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEBNA1BP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EBNA1BP2
dbVarEBNA1BP2
ClinVarEBNA1BP2
1000_GenomesEBNA1BP2 
Exome Variant ServerEBNA1BP2
ExAC (Exome Aggregation Consortium)EBNA1BP2 (select the gene name)
Genetic variants : HAPMAP10969
Genomic Variants (DGV)EBNA1BP2 [DGVbeta]
DECIPHEREBNA1BP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEBNA1BP2 
Mutations
ICGC Data PortalEBNA1BP2 
TCGA Data PortalEBNA1BP2 
Broad Tumor PortalEBNA1BP2
OASIS PortalEBNA1BP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEBNA1BP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEBNA1BP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EBNA1BP2
DgiDB (Drug Gene Interaction Database)EBNA1BP2
DoCM (Curated mutations)EBNA1BP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EBNA1BP2 (select a term)
intoGenEBNA1BP2
Cancer3DEBNA1BP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614443   
Orphanet
MedgenEBNA1BP2
Genetic Testing Registry EBNA1BP2
NextProtQ99848 [Medical]
TSGene10969
GENETestsEBNA1BP2
Huge Navigator EBNA1BP2 [HugePedia]
snp3D : Map Gene to Disease10969
BioCentury BCIQEBNA1BP2
ClinGenEBNA1BP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10969
Chemical/Pharm GKB GenePA27586
Clinical trialEBNA1BP2
Miscellaneous
canSAR (ICR)EBNA1BP2 (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEBNA1BP2
EVEXEBNA1BP2
GoPubMedEBNA1BP2
iHOPEBNA1BP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:14:09 CEST 2017

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