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ECHDC3 (enoyl-CoA hydratase domain containing 3)

Identity

Alias (NCBI)-
HGNC (Hugo) ECHDC3
HGNC Alias symbFLJ20909
HGNC Previous nameenoyl Coenzyme A hydratase domain containing 3
LocusID (NCBI) 79746
Atlas_Id 62715
Location 10p14  [Link to chromosome band 10p14]
Location_base_pair Starts at 11742382 and ends at 11764070 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ECHDC3 (10p14) / ECHDC3 (10p14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ECHDC3   23489
Cards
Entrez_Gene (NCBI)ECHDC3    enoyl-CoA hydratase domain containing 3
Aliases
GeneCards (Weizmann)ECHDC3
Ensembl hg19 (Hinxton)ENSG00000134463 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134463 [Gene_View]  ENSG00000134463 [Sequence]  chr10:11742382-11764070 [Contig_View]  ECHDC3 [Vega]
ICGC DataPortalENSG00000134463
TCGA cBioPortalECHDC3
AceView (NCBI)ECHDC3
Genatlas (Paris)ECHDC3
SOURCE (Princeton)ECHDC3
Genetics Home Reference (NIH)ECHDC3
Genomic and cartography
GoldenPath hg38 (UCSC)ECHDC3  -     chr10:11742382-11764070 +  10p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ECHDC3  -     10p14   [Description]    (hg19-Feb_2009)
GoldenPathECHDC3 - 10p14 [CytoView hg19]  ECHDC3 - 10p14 [CytoView hg38]
ImmunoBaseENSG00000134463
Genome Data Viewer NCBIECHDC3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF275677 AF289604 AK024562 AK222511 AK290902
RefSeq transcript (Entrez)NM_024693
Consensus coding sequences : CCDS (NCBI)ECHDC3
Gene ExpressionECHDC3 [ NCBI-GEO ]   ECHDC3 [ EBI - ARRAY_EXPRESS ]   ECHDC3 [ SEEK ]   ECHDC3 [ MEM ]
Gene Expression Viewer (FireBrowse)ECHDC3 [ Firebrowse - Broad ]
GenevisibleExpression of ECHDC3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79746
GTEX Portal (Tissue expression)ECHDC3
Human Protein AtlasENSG00000134463-ECHDC3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DC8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DC8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DC8
PhosPhoSitePlusQ96DC8
Domains : Interpro (EBI)ClpP/crotonase-like_dom_sf    Enoyl-CoA_hydra/iso    Enoyl-CoA_hydra_C   
Domain families : Pfam (Sanger)ECH_1 (PF00378)   
Domain families : Pfam (NCBI)pfam00378   
Conserved Domain (NCBI)ECHDC3
PDB (RSDB)2VX2   
PDB Europe2VX2   
PDB (PDBSum)2VX2   
PDB (IMB)2VX2   
Structural Biology KnowledgeBase2VX2   
SCOP (Structural Classification of Proteins)2VX2   
CATH (Classification of proteins structures)2VX2   
SuperfamilyQ96DC8
AlphaFold pdb e-kbQ96DC8   
Human Protein Atlas [tissue]ENSG00000134463-ECHDC3 [tissue]
HPRD10930
Protein Interaction databases
DIP (DOE-UCLA)Q96DC8
IntAct (EBI)Q96DC8
BioGRIDECHDC3
STRING (EMBL)ECHDC3
ZODIACECHDC3
Ontologies - Pathways
QuickGOQ96DC8
Ontology : AmiGOenoyl-CoA hydratase activity  mitochondrion  mitochondrion  fatty acid metabolic process  positive regulation of cellular response to insulin stimulus  
Ontology : EGO-EBIenoyl-CoA hydratase activity  mitochondrion  mitochondrion  fatty acid metabolic process  positive regulation of cellular response to insulin stimulus  
NDEx NetworkECHDC3
Atlas of Cancer Signalling NetworkECHDC3
Wikipedia pathwaysECHDC3
Orthology - Evolution
OrthoDB79746
GeneTree (enSembl)ENSG00000134463
Phylogenetic Trees/Animal Genes : TreeFamECHDC3
Homologs : HomoloGeneECHDC3
Homology/Alignments : Family Browser (UCSC)ECHDC3
Gene fusions - Rearrangements
Fusion : QuiverECHDC3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerECHDC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ECHDC3
dbVarECHDC3
ClinVarECHDC3
MonarchECHDC3
1000_GenomesECHDC3 
Exome Variant ServerECHDC3
GNOMAD BrowserENSG00000134463
Varsome BrowserECHDC3
ACMGECHDC3 variants
VarityQ96DC8
Genomic Variants (DGV)ECHDC3 [DGVbeta]
DECIPHERECHDC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisECHDC3 
Mutations
ICGC Data PortalECHDC3 
TCGA Data PortalECHDC3 
Broad Tumor PortalECHDC3
OASIS PortalECHDC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICECHDC3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DECHDC3
Mutations and Diseases : HGMDECHDC3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaECHDC3
DgiDB (Drug Gene Interaction Database)ECHDC3
DoCM (Curated mutations)ECHDC3
CIViC (Clinical Interpretations of Variants in Cancer)ECHDC3
Cancer3DECHDC3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETECHDC3
MedgenECHDC3
Genetic Testing Registry ECHDC3
NextProtQ96DC8 [Medical]
GENETestsECHDC3
Target ValidationECHDC3
Huge Navigator ECHDC3 [HugePedia]
ClinGenECHDC3
Clinical trials, drugs, therapy
MyCancerGenomeECHDC3
Protein Interactions : CTDECHDC3
Pharm GKB GenePA134881215
PharosQ96DC8
Clinical trialECHDC3
Miscellaneous
canSAR (ICR)ECHDC3
HarmonizomeECHDC3
DataMed IndexECHDC3
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXECHDC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:48:36 CEST 2021

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