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ECHDC3 (enoyl CoA hydratase domain containing 3)

Identity

Alias_namesenoyl Coenzyme A hydratase domain containing 3
Alias_symbol (synonym)FLJ20909
Other alias-
HGNC (Hugo) ECHDC3
LocusID (NCBI) 79746
Atlas_Id 62715
Location 10p14  [Link to chromosome band 10p14]
Location_base_pair Starts at 11784356 and ends at 11806065 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ECHDC3 (10p14) / ECHDC3 (10p14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ECHDC3   23489
Cards
Entrez_Gene (NCBI)ECHDC3  79746  enoyl CoA hydratase domain containing 3
Aliases
GeneCards (Weizmann)ECHDC3
Ensembl hg19 (Hinxton)ENSG00000134463 [Gene_View]  chr10:11784356-11806065 [Contig_View]  ECHDC3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000134463 [Gene_View]  chr10:11784356-11806065 [Contig_View]  ECHDC3 [Vega]
ICGC DataPortalENSG00000134463
TCGA cBioPortalECHDC3
AceView (NCBI)ECHDC3
Genatlas (Paris)ECHDC3
WikiGenes79746
SOURCE (Princeton)ECHDC3
Genetics Home Reference (NIH)ECHDC3
Genomic and cartography
GoldenPath hg19 (UCSC)ECHDC3  -     chr10:11784356-11806065 +  10p14   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ECHDC3  -     10p14   [Description]    (hg38-Dec_2013)
EnsemblECHDC3 - 10p14 [CytoView hg19]  ECHDC3 - 10p14 [CytoView hg38]
Mapping of homologs : NCBIECHDC3 [Mapview hg19]  ECHDC3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF275677 AF289604 AK024562 AK222511 AK290902
RefSeq transcript (Entrez)NM_024693
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_008705 NW_004929370
Consensus coding sequences : CCDS (NCBI)ECHDC3
Cluster EST : UnigeneHs.22242 [ NCBI ]
CGAP (NCI)Hs.22242
Alternative Splicing GalleryENSG00000134463
Gene ExpressionECHDC3 [ NCBI-GEO ]   ECHDC3 [ EBI - ARRAY_EXPRESS ]   ECHDC3 [ SEEK ]   ECHDC3 [ MEM ]
Gene Expression Viewer (FireBrowse)ECHDC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79746
GTEX Portal (Tissue expression)ECHDC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DC8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DC8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DC8
Splice isoforms : SwissVarQ96DC8
PhosPhoSitePlusQ96DC8
Domains : Interpro (EBI)ClpP/crotonase-like_dom    Crotonase_core_superfam   
Domain families : Pfam (Sanger)ECH (PF00378)   
Domain families : Pfam (NCBI)pfam00378   
Conserved Domain (NCBI)ECHDC3
DMDM Disease mutations79746
Blocks (Seattle)ECHDC3
PDB (SRS)2VX2   
PDB (PDBSum)2VX2   
PDB (IMB)2VX2   
PDB (RSDB)2VX2   
Structural Biology KnowledgeBase2VX2   
SCOP (Structural Classification of Proteins)2VX2   
CATH (Classification of proteins structures)2VX2   
SuperfamilyQ96DC8
Human Protein AtlasENSG00000134463
Peptide AtlasQ96DC8
HPRD10930
IPIIPI00256376   IPI00892718   IPI00477346   IPI00643058   
Protein Interaction databases
DIP (DOE-UCLA)Q96DC8
IntAct (EBI)Q96DC8
FunCoupENSG00000134463
BioGRIDECHDC3
STRING (EMBL)ECHDC3
ZODIACECHDC3
Ontologies - Pathways
QuickGOQ96DC8
Ontology : AmiGOcatalytic activity  mitochondrion  metabolic process  
Ontology : EGO-EBIcatalytic activity  mitochondrion  metabolic process  
NDEx NetworkECHDC3
Atlas of Cancer Signalling NetworkECHDC3
Wikipedia pathwaysECHDC3
Orthology - Evolution
OrthoDB79746
GeneTree (enSembl)ENSG00000134463
Phylogenetic Trees/Animal Genes : TreeFamECHDC3
HOVERGENQ96DC8
HOGENOMQ96DC8
Homologs : HomoloGeneECHDC3
Homology/Alignments : Family Browser (UCSC)ECHDC3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerECHDC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ECHDC3
dbVarECHDC3
ClinVarECHDC3
1000_GenomesECHDC3 
Exome Variant ServerECHDC3
ExAC (Exome Aggregation Consortium)ECHDC3 (select the gene name)
Genetic variants : HAPMAP79746
Genomic Variants (DGV)ECHDC3 [DGVbeta]
DECIPHER (Syndromes)10:11784356-11806065  ENSG00000134463
CONAN: Copy Number AnalysisECHDC3 
Mutations
ICGC Data PortalECHDC3 
TCGA Data PortalECHDC3 
Broad Tumor PortalECHDC3
OASIS PortalECHDC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICECHDC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDECHDC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ECHDC3
DgiDB (Drug Gene Interaction Database)ECHDC3
DoCM (Curated mutations)ECHDC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ECHDC3 (select a term)
intoGenECHDC3
Cancer3DECHDC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenECHDC3
Genetic Testing Registry ECHDC3
NextProtQ96DC8 [Medical]
TSGene79746
GENETestsECHDC3
Huge Navigator ECHDC3 [HugePedia]
snp3D : Map Gene to Disease79746
BioCentury BCIQECHDC3
ClinGenECHDC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79746
Chemical/Pharm GKB GenePA134881215
Clinical trialECHDC3
Miscellaneous
canSAR (ICR)ECHDC3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineECHDC3
EVEXECHDC3
GoPubMedECHDC3
iHOPECHDC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:02:29 CET 2017

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