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ECI1 (enoyl-CoA delta isomerase 1)

Identity

Alias_namesDCI
dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenzyme A isomerase)
dodecenoyl-CoA isomerase
Other alias
HGNC (Hugo) ECI1
LocusID (NCBI) 1632
Atlas_Id 62716
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2239872 and ends at 2251601 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MRPL4 (19p13.2) / ECI1 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ECI1   2703
Cards
Entrez_Gene (NCBI)ECI1  1632  enoyl-CoA delta isomerase 1
AliasesDCI
GeneCards (Weizmann)ECI1
Ensembl hg19 (Hinxton)ENSG00000167969 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167969 [Gene_View]  chr16:2239872-2251601 [Contig_View]  ECI1 [Vega]
ICGC DataPortalENSG00000167969
TCGA cBioPortalECI1
AceView (NCBI)ECI1
Genatlas (Paris)ECI1
WikiGenes1632
SOURCE (Princeton)ECI1
Genetics Home Reference (NIH)ECI1
Genomic and cartography
GoldenPath hg38 (UCSC)ECI1  -     chr16:2239872-2251601 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ECI1  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblECI1 - 16p13.3 [CytoView hg19]  ECI1 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIECI1 [Mapview hg19]  ECI1 [Mapview hg38]
OMIM600305   
Gene and transcription
Genbank (Entrez)AK291127 BC000762 BC002746 BC009631 BC019316
RefSeq transcript (Entrez)NM_001178029 NM_001919
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ECI1
Cluster EST : UnigeneHs.403436 [ NCBI ]
CGAP (NCI)Hs.403436
Alternative Splicing GalleryENSG00000167969
Gene ExpressionECI1 [ NCBI-GEO ]   ECI1 [ EBI - ARRAY_EXPRESS ]   ECI1 [ SEEK ]   ECI1 [ MEM ]
Gene Expression Viewer (FireBrowse)ECI1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1632
GTEX Portal (Tissue expression)ECI1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP42126   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP42126  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP42126
Splice isoforms : SwissVarP42126
Catalytic activity : Enzyme5.3.3.8 [ Enzyme-Expasy ]   5.3.3.85.3.3.8 [ IntEnz-EBI ]   5.3.3.8 [ BRENDA ]   5.3.3.8 [ KEGG ]   
PhosPhoSitePlusP42126
Domaine pattern : Prosite (Expaxy)ENOYL_COA_HYDRATASE (PS00166)   
Domains : Interpro (EBI)ClpP/crotonase-like_dom    Crotonase_core_superfam    Enoyl-CoA_hyd/isom_CS   
Domain families : Pfam (Sanger)ECH_1 (PF00378)   
Domain families : Pfam (NCBI)pfam00378   
Conserved Domain (NCBI)ECI1
DMDM Disease mutations1632
Blocks (Seattle)ECI1
PDB (SRS)1SG4   
PDB (PDBSum)1SG4   
PDB (IMB)1SG4   
PDB (RSDB)1SG4   
Structural Biology KnowledgeBase1SG4   
SCOP (Structural Classification of Proteins)1SG4   
CATH (Classification of proteins structures)1SG4   
SuperfamilyP42126
Human Protein AtlasENSG00000167969
Peptide AtlasP42126
HPRD02628
IPIIPI00300567   IPI00398758   
Protein Interaction databases
DIP (DOE-UCLA)P42126
IntAct (EBI)P42126
FunCoupENSG00000167969
BioGRIDECI1
STRING (EMBL)ECI1
ZODIACECI1
Ontologies - Pathways
QuickGOP42126
Ontology : AmiGOdodecenoyl-CoA delta-isomerase activity  dodecenoyl-CoA delta-isomerase activity  enoyl-CoA hydratase activity  mitochondrion  mitochondrial inner membrane  mitochondrial matrix  mitochondrial matrix  fatty acid beta-oxidation  fatty acid beta-oxidation  fatty acid beta-oxidation  fatty acid beta-oxidation  intramolecular oxidoreductase activity  extracellular exosome  
Ontology : EGO-EBIdodecenoyl-CoA delta-isomerase activity  dodecenoyl-CoA delta-isomerase activity  enoyl-CoA hydratase activity  mitochondrion  mitochondrial inner membrane  mitochondrial matrix  mitochondrial matrix  fatty acid beta-oxidation  fatty acid beta-oxidation  fatty acid beta-oxidation  fatty acid beta-oxidation  intramolecular oxidoreductase activity  extracellular exosome  
Pathways : KEGGFatty acid degradation   
NDEx NetworkECI1
Atlas of Cancer Signalling NetworkECI1
Wikipedia pathwaysECI1
Orthology - Evolution
OrthoDB1632
GeneTree (enSembl)ENSG00000167969
Phylogenetic Trees/Animal Genes : TreeFamECI1
HOVERGENP42126
HOGENOMP42126
Homologs : HomoloGeneECI1
Homology/Alignments : Family Browser (UCSC)ECI1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerECI1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ECI1
dbVarECI1
ClinVarECI1
1000_GenomesECI1 
Exome Variant ServerECI1
ExAC (Exome Aggregation Consortium)ECI1 (select the gene name)
Genetic variants : HAPMAP1632
Genomic Variants (DGV)ECI1 [DGVbeta]
DECIPHERECI1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisECI1 
Mutations
ICGC Data PortalECI1 
TCGA Data PortalECI1 
Broad Tumor PortalECI1
OASIS PortalECI1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICECI1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDECI1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ECI1
DgiDB (Drug Gene Interaction Database)ECI1
DoCM (Curated mutations)ECI1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ECI1 (select a term)
intoGenECI1
Cancer3DECI1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600305   
Orphanet
MedgenECI1
Genetic Testing Registry ECI1
NextProtP42126 [Medical]
TSGene1632
GENETestsECI1
Target ValidationECI1
Huge Navigator ECI1 [HugePedia]
snp3D : Map Gene to Disease1632
BioCentury BCIQECI1
ClinGenECI1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1632
Chemical/Pharm GKB GenePA27173
Clinical trialECI1
Miscellaneous
canSAR (ICR)ECI1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineECI1
EVEXECI1
GoPubMedECI1
iHOPECI1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:06:49 CEST 2017

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