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ECM2 (extracellular matrix protein 2)

Identity

Alias_namesextracellular matrix protein 2
Other alias-
HGNC (Hugo) ECM2
LocusID (NCBI) 1842
Atlas_Id 47521
Location 9q22.31  [Link to chromosome band 9q22]
Location_base_pair Starts at 92495312 and ends at 92536092 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ECM2   3154
Cards
Entrez_Gene (NCBI)ECM2  1842  extracellular matrix protein 2
Aliases
GeneCards (Weizmann)ECM2
Ensembl hg19 (Hinxton)ENSG00000106823 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106823 [Gene_View]  chr9:92495312-92536092 [Contig_View]  ECM2 [Vega]
ICGC DataPortalENSG00000106823
TCGA cBioPortalECM2
AceView (NCBI)ECM2
Genatlas (Paris)ECM2
WikiGenes1842
SOURCE (Princeton)ECM2
Genetics Home Reference (NIH)ECM2
Genomic and cartography
GoldenPath hg38 (UCSC)ECM2  -     chr9:92495312-92536092 -  9q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ECM2  -     9q22.31   [Description]    (hg19-Feb_2009)
EnsemblECM2 - 9q22.31 [CytoView hg19]  ECM2 - 9q22.31 [CytoView hg38]
Mapping of homologs : NCBIECM2 [Mapview hg19]  ECM2 [Mapview hg38]
OMIM603479   
Gene and transcription
Genbank (Entrez)AB011792 AK296458 AK298278 AK303922 AK308485
RefSeq transcript (Entrez)NM_001197295 NM_001197296 NM_001393
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ECM2
Cluster EST : UnigeneHs.117060 [ NCBI ]
CGAP (NCI)Hs.117060
Alternative Splicing GalleryENSG00000106823
Gene ExpressionECM2 [ NCBI-GEO ]   ECM2 [ EBI - ARRAY_EXPRESS ]   ECM2 [ SEEK ]   ECM2 [ MEM ]
Gene Expression Viewer (FireBrowse)ECM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1842
GTEX Portal (Tissue expression)ECM2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94769   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94769  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94769
Splice isoforms : SwissVarO94769
PhosPhoSitePlusO94769
Domaine pattern : Prosite (Expaxy)LRR (PS51450)    VWFC_1 (PS01208)    VWFC_2 (PS50184)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    VWF_dom   
Domain families : Pfam (Sanger)LRR_8 (PF13855)    VWC (PF00093)   
Domain families : Pfam (NCBI)pfam13855    pfam00093   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  VWC (SM00214)  
Conserved Domain (NCBI)ECM2
DMDM Disease mutations1842
Blocks (Seattle)ECM2
SuperfamilyO94769
Human Protein AtlasENSG00000106823
Peptide AtlasO94769
HPRD09148
IPIIPI00015315   IPI00967874   IPI01018327   IPI00982271   IPI00384977   
Protein Interaction databases
DIP (DOE-UCLA)O94769
IntAct (EBI)O94769
FunCoupENSG00000106823
BioGRIDECM2
STRING (EMBL)ECM2
ZODIACECM2
Ontologies - Pathways
QuickGOO94769
Ontology : AmiGOintegrin binding  proteinaceous extracellular matrix  interstitial matrix  extracellular space  cell-matrix adhesion  axonogenesis  heparin binding  positive regulation of cell-substrate adhesion  extracellular matrix organization  collagen V binding  
Ontology : EGO-EBIintegrin binding  proteinaceous extracellular matrix  interstitial matrix  extracellular space  cell-matrix adhesion  axonogenesis  heparin binding  positive regulation of cell-substrate adhesion  extracellular matrix organization  collagen V binding  
NDEx NetworkECM2
Atlas of Cancer Signalling NetworkECM2
Wikipedia pathwaysECM2
Orthology - Evolution
OrthoDB1842
GeneTree (enSembl)ENSG00000106823
Phylogenetic Trees/Animal Genes : TreeFamECM2
HOVERGENO94769
HOGENOMO94769
Homologs : HomoloGeneECM2
Homology/Alignments : Family Browser (UCSC)ECM2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerECM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ECM2
dbVarECM2
ClinVarECM2
1000_GenomesECM2 
Exome Variant ServerECM2
ExAC (Exome Aggregation Consortium)ECM2 (select the gene name)
Genetic variants : HAPMAP1842
Genomic Variants (DGV)ECM2 [DGVbeta]
DECIPHERECM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisECM2 
Mutations
ICGC Data PortalECM2 
TCGA Data PortalECM2 
Broad Tumor PortalECM2
OASIS PortalECM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICECM2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDECM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ECM2
DgiDB (Drug Gene Interaction Database)ECM2
DoCM (Curated mutations)ECM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ECM2 (select a term)
intoGenECM2
Cancer3DECM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603479   
Orphanet
MedgenECM2
Genetic Testing Registry ECM2
NextProtO94769 [Medical]
TSGene1842
GENETestsECM2
Target ValidationECM2
Huge Navigator ECM2 [HugePedia]
snp3D : Map Gene to Disease1842
BioCentury BCIQECM2
ClinGenECM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1842
Chemical/Pharm GKB GenePA27599
Clinical trialECM2
Miscellaneous
canSAR (ICR)ECM2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineECM2
EVEXECM2
GoPubMedECM2
iHOPECM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:06:24 CEST 2017

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