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ECM2 (extracellular matrix protein 2, female organ and adipocyte specific)

Identity

Other names-
HGNC (Hugo) ECM2
LocusID (NCBI) 1842
Location 9q22.31
Location_base_pair Starts at 95257594 and ends at 95298374 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ECM2   3154
Entrez_Gene (NCBI)ECM2  1842  extracellular matrix protein 2, female organ and adipocyte specific
Cards
GeneCards (Weizmann)ECM2
Ensembl (Hinxton)ENSG00000106823 [Gene_View]  chr9:95257594-95298374 [Contig_View]  ECM2 [Vega]
AceView (NCBI)ECM2
Genatlas (Paris)ECM2
SOURCE (Stanford)NM_001197295 NM_001197296 NM_001393
Genomic and cartography
GoldenPath (UCSC)ECM2  -  9q22.31   chr9:95257594-95298374 -  9q22.31   [Description]    (hg19-Feb_2009)
EnsemblECM2 - 9q22.31 [CytoView]
Mapping of homologs : NCBIECM2 [Mapview]
OMIM603479   
Gene and transcription
Genbank (Entrez)AB011792 AK296458 AK298278 AK303922 AK308485
RefSeq transcript (SRS)NM_001197295 NM_001197296 NM_001393
RefSeq transcript (Entrez)NM_001197295 NM_001197296 NM_001393
RefSeq genomic (SRS)AC_000141 NC_000009 NC_018920 NT_008470 NW_001839229 NW_004078058
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NT_008470 NW_001839229 NW_004078058
Consensus coding sequences : CCDS (NCBI)ECM2
Cluster EST : UnigeneHs.117060 [ SRS ] Hs.117060 [ NCBI ]
CGAP (NCI)Hs.117060
Alternative Splicing : Fast-db (Paris)GSHG0030957
Alternative Splicing GalleryENSG00000106823
Gene ExpressionECM2 [ NCBI-GEO ]   ECM2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94769 (SRS) O94769 (Uniprot)
NextProtO94769
With graphics : InterProO94769
Splice isoforms : SwissVarO94769(Swissvar)
Domaine pattern : Prosite (SRS)LRR (PS51450)    VWFC_1 (PS01208)    VWFC_2 (PS50184)   
Domaine pattern : Prosite (Expaxy)LRR (PS51450)    VWFC_1 (PS01208)    VWFC_2 (PS50184)   
Domains : Interpro (SRS)Leu-rich_rpt    VWF_C   
Domains : Interpro (EBI)Leu-rich_rpt    VWF_C   
Related proteins : CluSTrO94769
Domain families : Pfam (SRS)VWC (PF00093)   
Domain families : Pfam (Sanger)VWC (PF00093)   
Domain families : Pfam (NCBI)pfam00093   
Domain families : Smart (EMBL)VWC (SM00214)  
DMDM1842
Blocks (Seattle)O94769
Human Protein AtlasENSG00000106823
HPRD09148
IPIIPI00015315   IPI00967874   IPI01018327   IPI00982271   IPI00384977   
Protein Interaction databases
DIP (DOE-UCLA)O94769
IntAct (EBI)O94769
FunCoupENSG00000106823
REACTOMEECM2
Protein Interaction Database1842
BioGRIDECM2
InParanoidO94769
Interologous Interaction database O94769
IntegromeDBECM2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ECM2
SNP (GeneSNP Utah)ECM2
SNP : HGBaseECM2
Genetic variants : HAPMAPECM2
Somatic Mutations in Cancer : COSMICECM2 
CONAN: Copy Number AnalysisECM2 
Mutations and Diseases : HGMDECM2
OMIM603479   
GENETests603479   
Disease Genetic AssociationECM2
Huge Navigator ECM2 [HugePedia]  ECM2 [HugeCancerGEM]
Genomic VariantsECM2  ECM2 [DGVbeta]
snp3D : Map Gene to Disease1842
General knowledge
Homologs : HomoloGeneECM2
Homology/Alignments : Family Browser (UCSC)ECM2
Phylogenetic Trees/Animal Genes : TreeFamECM2
Chemical/Protein Interactions : CTD1842
Chemical/Pharm GKB GenePA27599
Clinical trialECM2
Cancer Resource (Charite)ENSG00000106823
Ontology : AmiGOintegrin binding  proteinaceous extracellular matrix  interstitial matrix  cell-matrix adhesion  heparin binding  positive regulation of cell-substrate adhesion  extracellular matrix organization  collagen V binding  
Ontology : EGO-EBIintegrin binding  proteinaceous extracellular matrix  interstitial matrix  cell-matrix adhesion  heparin binding  positive regulation of cell-substrate adhesion  extracellular matrix organization  collagen V binding  
Other databases
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
PubGeneECM2
iHOPECM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:41:49 CEST 2013
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