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ECRG4 (ECRG4 augurin precursor)

Identity

Alias_namesC2orf40
chromosome 2 open reading frame 40
Alias_symbol (synonym)augurin
Other alias
HGNC (Hugo) ECRG4
LocusID (NCBI) 84417
Atlas_Id 40399
Location 2q12.2  [Link to chromosome band 2q12]
Location_base_pair Starts at 106065657 and ends at 106078153 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ECRG4   24642
Cards
Entrez_Gene (NCBI)ECRG4  84417  ECRG4 augurin precursor
AliasesC2orf40
GeneCards (Weizmann)ECRG4
Ensembl hg19 (Hinxton)ENSG00000119147 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119147 [Gene_View]  ENSG00000119147 [Sequence]  chr2:106065657-106078153 [Contig_View]  ECRG4 [Vega]
ICGC DataPortalENSG00000119147
TCGA cBioPortalECRG4
AceView (NCBI)ECRG4
Genatlas (Paris)ECRG4
WikiGenes84417
SOURCE (Princeton)ECRG4
Genetics Home Reference (NIH)ECRG4
Genomic and cartography
GoldenPath hg38 (UCSC)ECRG4  -     chr2:106065657-106078153 +  -   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ECRG4  -     -   [Description]    (hg19-Feb_2009)
GoldenPathECRG4 - - [CytoView hg19]  ECRG4 - - [CytoView hg38]
ImmunoBaseENSG00000119147
Mapping of homologs : NCBIECRG4 [Mapview hg19]  ECRG4 [Mapview hg38]
OMIM611752   
Gene and transcription
Genbank (Entrez)AF325503 AY358601 BC021742
RefSeq transcript (Entrez)NM_032411
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ECRG4
Cluster EST : UnigeneHs.43125 [ NCBI ]
CGAP (NCI)Hs.43125
Alternative Splicing GalleryENSG00000119147
Gene ExpressionECRG4 [ NCBI-GEO ]   ECRG4 [ EBI - ARRAY_EXPRESS ]   ECRG4 [ SEEK ]   ECRG4 [ MEM ]
Gene Expression Viewer (FireBrowse)ECRG4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84417
GTEX Portal (Tissue expression)ECRG4
Human Protein AtlasENSG00000119147-ECRG4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1Z8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1Z8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1Z8
Splice isoforms : SwissVarQ9H1Z8
PhosPhoSitePlusQ9H1Z8
Domains : Interpro (EBI)Augurin   
Domain families : Pfam (Sanger)Augurin (PF15187)   
Domain families : Pfam (NCBI)pfam15187   
Conserved Domain (NCBI)ECRG4
DMDM Disease mutations84417
Blocks (Seattle)ECRG4
SuperfamilyQ9H1Z8
Human Protein Atlas [tissue]ENSG00000119147-ECRG4 [tissue]
Peptide AtlasQ9H1Z8
HPRD13261
IPIIPI00031769   IPI00917182   IPI00917326   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1Z8
IntAct (EBI)Q9H1Z8
FunCoupENSG00000119147
BioGRIDECRG4
STRING (EMBL)ECRG4
ZODIACECRG4
Ontologies - Pathways
QuickGOQ9H1Z8
Ontology : AmiGOextracellular space  extracellular space  cytoplasm  central nervous system development  apical plasma membrane  anaphase-promoting complex-dependent catabolic process  anaphase-promoting complex-dependent catabolic process  regulation of cell proliferation  G1 to G0 transition  G1 to G0 transition  cellular senescence  cellular senescence  
Ontology : EGO-EBIextracellular space  extracellular space  cytoplasm  central nervous system development  apical plasma membrane  anaphase-promoting complex-dependent catabolic process  anaphase-promoting complex-dependent catabolic process  regulation of cell proliferation  G1 to G0 transition  G1 to G0 transition  cellular senescence  cellular senescence  
NDEx NetworkECRG4
Atlas of Cancer Signalling NetworkECRG4
Wikipedia pathwaysECRG4
Orthology - Evolution
OrthoDB84417
GeneTree (enSembl)ENSG00000119147
Phylogenetic Trees/Animal Genes : TreeFamECRG4
HOGENOMQ9H1Z8
Homologs : HomoloGeneECRG4
Homology/Alignments : Family Browser (UCSC)ECRG4
Gene fusions - Rearrangements
Fusion : QuiverECRG4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerECRG4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ECRG4
dbVarECRG4
ClinVarECRG4
1000_GenomesECRG4 
Exome Variant ServerECRG4
ExAC (Exome Aggregation Consortium)ENSG00000119147
GNOMAD BrowserENSG00000119147
Varsome BrowserECRG4
Genetic variants : HAPMAP84417
Genomic Variants (DGV)ECRG4 [DGVbeta]
DECIPHERECRG4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisECRG4 
Mutations
ICGC Data PortalECRG4 
TCGA Data PortalECRG4 
Broad Tumor PortalECRG4
OASIS PortalECRG4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDECRG4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ECRG4
DgiDB (Drug Gene Interaction Database)ECRG4
DoCM (Curated mutations)ECRG4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ECRG4 (select a term)
intoGenECRG4
Cancer3DECRG4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611752   
Orphanet
DisGeNETECRG4
MedgenECRG4
Genetic Testing Registry ECRG4
NextProtQ9H1Z8 [Medical]
TSGene84417
GENETestsECRG4
Target ValidationECRG4
Huge Navigator ECRG4 [HugePedia]
snp3D : Map Gene to Disease84417
BioCentury BCIQECRG4
ClinGenECRG4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84417
Chemical/Pharm GKB GenePA147358728
Clinical trialECRG4
Miscellaneous
canSAR (ICR)ECRG4 (select the gene name)
DataMed IndexECRG4
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineECRG4
EVEXECRG4
GoPubMedECRG4
iHOPECRG4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 26 18:06:47 CEST 2019

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