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ECSCR (endothelial cell surface expressed chemotaxis and apoptosis regulator)

Identity

Alias_namesendothelial cell-specific chemotaxis regulator
Alias_symbol (synonym)ECSM2
ARIA
Other alias
HGNC (Hugo) ECSCR
LocusID (NCBI) 641700
Atlas_Id 56251
Location 5q31.2  [Link to chromosome band 5q31]
Location_base_pair Starts at 139448554 and ends at 139462743 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
U2AF2 (19q13.42) / ECSCR (5q31.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ECSCR   35454
Cards
Entrez_Gene (NCBI)ECSCR  641700  endothelial cell surface expressed chemotaxis and apoptosis regulator
AliasesARIA; ECSM2
GeneCards (Weizmann)ECSCR
Ensembl hg19 (Hinxton)ENSG00000249751 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249751 [Gene_View]  chr5:139448554-139462743 [Contig_View]  ECSCR [Vega]
ICGC DataPortalENSG00000249751
TCGA cBioPortalECSCR
AceView (NCBI)ECSCR
Genatlas (Paris)ECSCR
WikiGenes641700
SOURCE (Princeton)ECSCR
Genetics Home Reference (NIH)ECSCR
Genomic and cartography
GoldenPath hg38 (UCSC)ECSCR  -     chr5:139448554-139462743 -  5q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ECSCR  -     5q31.2   [Description]    (hg19-Feb_2009)
EnsemblECSCR - 5q31.2 [CytoView hg19]  ECSCR - 5q31.2 [CytoView hg38]
Mapping of homologs : NCBIECSCR [Mapview hg19]  ECSCR [Mapview hg38]
OMIM615736   
Gene and transcription
Genbank (Entrez)AI699314 BC146912 BC146913 BF526332 BI834795
RefSeq transcript (Entrez)NM_001077693 NM_001293739
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ECSCR
Cluster EST : UnigeneHs.570903 [ NCBI ]
CGAP (NCI)Hs.570903
Alternative Splicing GalleryENSG00000249751
Gene ExpressionECSCR [ NCBI-GEO ]   ECSCR [ EBI - ARRAY_EXPRESS ]   ECSCR [ SEEK ]   ECSCR [ MEM ]
Gene Expression Viewer (FireBrowse)ECSCR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)641700
GTEX Portal (Tissue expression)ECSCR
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ19T08   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ19T08  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ19T08
Splice isoforms : SwissVarQ19T08
PhosPhoSitePlusQ19T08
Domains : Interpro (EBI)ECSCR   
Domain families : Pfam (Sanger)ECSCR (PF15820)   
Domain families : Pfam (NCBI)pfam15820   
Conserved Domain (NCBI)ECSCR
DMDM Disease mutations641700
Blocks (Seattle)ECSCR
SuperfamilyQ19T08
Human Protein AtlasENSG00000249751
Peptide AtlasQ19T08
IPIIPI00761163   IPI00385392   IPI00966242   
Protein Interaction databases
DIP (DOE-UCLA)Q19T08
IntAct (EBI)Q19T08
FunCoupENSG00000249751
BioGRIDECSCR
STRING (EMBL)ECSCR
ZODIACECSCR
Ontologies - Pathways
QuickGOQ19T08
Ontology : AmiGOangiogenesis  cytosol  plasma membrane  apoptotic process  chemotaxis  integral component of membrane  negative regulation of angiogenesis  cell differentiation  positive regulation of proteasomal protein catabolic process  positive regulation of endothelial cell apoptotic process  
Ontology : EGO-EBIangiogenesis  cytosol  plasma membrane  apoptotic process  chemotaxis  integral component of membrane  negative regulation of angiogenesis  cell differentiation  positive regulation of proteasomal protein catabolic process  positive regulation of endothelial cell apoptotic process  
NDEx NetworkECSCR
Atlas of Cancer Signalling NetworkECSCR
Wikipedia pathwaysECSCR
Orthology - Evolution
OrthoDB641700
GeneTree (enSembl)ENSG00000249751
Phylogenetic Trees/Animal Genes : TreeFamECSCR
HOVERGENQ19T08
HOGENOMQ19T08
Homologs : HomoloGeneECSCR
Homology/Alignments : Family Browser (UCSC)ECSCR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerECSCR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ECSCR
dbVarECSCR
ClinVarECSCR
1000_GenomesECSCR 
Exome Variant ServerECSCR
ExAC (Exome Aggregation Consortium)ECSCR (select the gene name)
Genetic variants : HAPMAP641700
Genomic Variants (DGV)ECSCR [DGVbeta]
DECIPHERECSCR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisECSCR 
Mutations
ICGC Data PortalECSCR 
TCGA Data PortalECSCR 
Broad Tumor PortalECSCR
OASIS PortalECSCR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICECSCR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDECSCR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ECSCR
DgiDB (Drug Gene Interaction Database)ECSCR
DoCM (Curated mutations)ECSCR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ECSCR (select a term)
intoGenECSCR
Cancer3DECSCR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615736   
Orphanet
MedgenECSCR
Genetic Testing Registry ECSCR
NextProtQ19T08 [Medical]
TSGene641700
GENETestsECSCR
Huge Navigator ECSCR [HugePedia]
snp3D : Map Gene to Disease641700
BioCentury BCIQECSCR
ClinGenECSCR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD641700
Chemical/Pharm GKB GenePA164718891
Clinical trialECSCR
Miscellaneous
canSAR (ICR)ECSCR (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineECSCR
EVEXECSCR
GoPubMedECSCR
iHOPECSCR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:14:11 CEST 2017

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