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ECT2L (epithelial cell transforming sequence 2 oncogene-like)

Identity

Other namesARHGEF32
C6orf91
FBXO49
LFDH
dJ509I19.2
dJ509I19.3
dJ509I19.5
HGNC (Hugo) ECT2L
LocusID (NCBI) 345930
Location 6q24.1
Location_base_pair Starts at 139117248 and ends at 139225207 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ECT2L   21118
Entrez_Gene (NCBI)ECT2L  345930  epithelial cell transforming sequence 2 oncogene-like
Cards
GeneCards (Weizmann)ECT2L
Ensembl (Hinxton)ENSG00000203734 [Gene_View]  chr6:139117248-139225207 [Contig_View]  ECT2L [Vega]
AceView (NCBI)ECT2L
Genatlas (Paris)ECT2L
SOURCE (Stanford)NM_001077706 NM_001195037
Genomic and cartography
GoldenPath (UCSC)ECT2L  -  6q24.1   chr6:139117248-139225207 +  6q24.1   [Description]    (hg19-Feb_2009)
EnsemblECT2L - 6q24.1 [CytoView]
Mapping of homologs : NCBIECT2L [Mapview]
Gene and transcription
Genbank (Entrez)AK304425 BC146884 DB221732 DC415949 DC416153
RefSeq transcript (SRS)NM_001077706 NM_001195037
RefSeq transcript (Entrez)NM_001077706 NM_001195037
RefSeq genomic (SRS)AC_000138 NC_000006 NC_018917 NT_025741 NW_001838990 NW_004078028
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NT_025741 NW_001838990 NW_004078028
Consensus coding sequences : CCDS (NCBI)ECT2L
Cluster EST : UnigeneHs.660603 [ SRS ] Hs.660603 [ NCBI ]
CGAP (NCI)Hs.660603
Alternative Splicing : Fast-db (Paris)GSHG0026068
Alternative Splicing GalleryENSG00000203734
Gene ExpressionECT2L [ NCBI-GEO ]   ECT2L [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ008S8 (SRS) Q008S8 (Uniprot)
NextProtQ008S8
With graphics : InterProQ008S8
Splice isoforms : SwissVarQ008S8(Swissvar)
Domaine pattern : Prosite (SRS)DH_1 (PS00741)    DH_2 (PS50010)    FBOX (PS50181)   
Domaine pattern : Prosite (Expaxy)DH_1 (PS00741)    DH_2 (PS50010)    FBOX (PS50181)   
Domains : Interpro (SRS)DH-domain    F-box_dom_cyclin-like    PH_like_dom   
Domains : Interpro (EBI)DH-domain    F-box_dom_cyclin-like    PH_like_dom   
Related proteins : CluSTrQ008S8
Domain families : Pfam (SRS)RhoGEF (PF00621)   
Domain families : Pfam (Sanger)RhoGEF (PF00621)   
Domain families : Pfam (NCBI)pfam00621   
Domain families : Smart (EMBL)FBOX (SM00256)  RhoGEF (SM00325)  
DMDM345930
Blocks (Seattle)Q008S8
Human Protein AtlasENSG00000203734
IPIIPI00247492   IPI00642818   IPI00643329   
Protein Interaction databases
DIP (DOE-UCLA)Q008S8
IntAct (EBI)Q008S8
FunCoupENSG00000203734
REACTOMEECT2L
Protein Interaction Database345930
BioGRIDECT2L
InParanoidQ008S8
Interologous Interaction database Q008S8
IntegromeDBECT2L
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ECT2L
SNP (GeneSNP Utah)ECT2L
SNP : HGBaseECT2L
Genetic variants : HAPMAPECT2L
Cancer Gene: CensusECT2L 
Somatic Mutations in Cancer : COSMICECT2L 
CONAN: Copy Number AnalysisECT2L 
Mutations and Diseases : HGMDECT2L
OMIM
GENETests
Disease Genetic AssociationECT2L
Huge Navigator ECT2L [HugePedia]  ECT2L [HugeCancerGEM]
Genomic VariantsECT2L  ECT2L [DGVbeta]
snp3D : Map Gene to Disease345930
General knowledge
Homologs : HomoloGeneECT2L
Homology/Alignments : Family Browser (UCSC)ECT2L
Phylogenetic Trees/Animal Genes : TreeFamECT2L
Chemical/Protein Interactions : CTD345930
Chemical/Pharm GKB GenePA134893289
Clinical trialECT2L
Cancer Resource (Charite)ENSG00000203734
Ontology : AmiGORho guanyl-nucleotide exchange factor activity  intracellular  regulation of Rho protein signal transduction  
Ontology : EGO-EBIRho guanyl-nucleotide exchange factor activity  intracellular  regulation of Rho protein signal transduction  
Other databases
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
PubGeneECT2L
iHOPECT2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:42:37 CEST 2013
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