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EDARADD (EDAR associated death domain)

Identity

Other aliasECTD11A
ECTD11B
ED3
EDA3
HGNC (Hugo) EDARADD
LocusID (NCBI) 128178
Atlas_Id 55435
Location 1q42.3  [Link to chromosome band 1q42]
Location_base_pair Starts at 236395416 and ends at 236484708 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EDARADD (1q42.3) / OSMR (5p13.1)LGALS8 (1q43) / EDARADD (1q42.3)SMYD3 (1q44) / EDARADD (1q42.3)
TGFBR3 (1p22.1) / EDARADD (1q42.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EDARADD   14341
Cards
Entrez_Gene (NCBI)EDARADD  128178  EDAR associated death domain
AliasesECTD11A; ECTD11B; ED3; EDA3
GeneCards (Weizmann)EDARADD
Ensembl hg19 (Hinxton)ENSG00000186197 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186197 [Gene_View]  chr1:236395416-236484708 [Contig_View]  EDARADD [Vega]
ICGC DataPortalENSG00000186197
TCGA cBioPortalEDARADD
AceView (NCBI)EDARADD
Genatlas (Paris)EDARADD
WikiGenes128178
SOURCE (Princeton)EDARADD
Genetics Home Reference (NIH)EDARADD
Genomic and cartography
GoldenPath hg38 (UCSC)EDARADD  -     chr1:236395416-236484708 +  1q42.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EDARADD  -     1q42.3   [Description]    (hg19-Feb_2009)
EnsemblEDARADD - 1q42.3 [CytoView hg19]  EDARADD - 1q42.3 [CytoView hg38]
Mapping of homologs : NCBIEDARADD [Mapview hg19]  EDARADD [Mapview hg38]
OMIM129490   224900   606603   614940   614941   
Gene and transcription
Genbank (Entrez)AK096339 AK290862 AK291930 AK314634 AY028913
RefSeq transcript (Entrez)NM_080738 NM_145861
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EDARADD
Cluster EST : UnigeneHs.352224 [ NCBI ]
CGAP (NCI)Hs.352224
Alternative Splicing GalleryENSG00000186197
Gene ExpressionEDARADD [ NCBI-GEO ]   EDARADD [ EBI - ARRAY_EXPRESS ]   EDARADD [ SEEK ]   EDARADD [ MEM ]
Gene Expression Viewer (FireBrowse)EDARADD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128178
GTEX Portal (Tissue expression)EDARADD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWZ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWZ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWZ3
Splice isoforms : SwissVarQ8WWZ3
PhosPhoSitePlusQ8WWZ3
Domains : Interpro (EBI)DEATH-like_dom    Death_domain   
Domain families : Pfam (Sanger)Death (PF00531)   
Domain families : Pfam (NCBI)pfam00531   
Conserved Domain (NCBI)EDARADD
DMDM Disease mutations128178
Blocks (Seattle)EDARADD
SuperfamilyQ8WWZ3
Human Protein AtlasENSG00000186197
Peptide AtlasQ8WWZ3
HPRD05965
IPIIPI00103484   IPI00152912   IPI00642058   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWZ3
IntAct (EBI)Q8WWZ3
FunCoupENSG00000186197
BioGRIDEDARADD
STRING (EMBL)EDARADD
ZODIACEDARADD
Ontologies - Pathways
QuickGOQ8WWZ3
Ontology : AmiGOprotein binding  cytosol  multicellular organism development  cell differentiation  tumor necrosis factor-mediated signaling pathway  
Ontology : EGO-EBIprotein binding  cytosol  multicellular organism development  cell differentiation  tumor necrosis factor-mediated signaling pathway  
NDEx NetworkEDARADD
Atlas of Cancer Signalling NetworkEDARADD
Wikipedia pathwaysEDARADD
Orthology - Evolution
OrthoDB128178
GeneTree (enSembl)ENSG00000186197
Phylogenetic Trees/Animal Genes : TreeFamEDARADD
HOVERGENQ8WWZ3
HOGENOMQ8WWZ3
Homologs : HomoloGeneEDARADD
Homology/Alignments : Family Browser (UCSC)EDARADD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEDARADD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EDARADD
dbVarEDARADD
ClinVarEDARADD
1000_GenomesEDARADD 
Exome Variant ServerEDARADD
ExAC (Exome Aggregation Consortium)EDARADD (select the gene name)
Genetic variants : HAPMAP128178
Genomic Variants (DGV)EDARADD [DGVbeta]
DECIPHEREDARADD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEDARADD 
Mutations
ICGC Data PortalEDARADD 
TCGA Data PortalEDARADD 
Broad Tumor PortalEDARADD
OASIS PortalEDARADD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEDARADD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEDARADD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EDARADD
DgiDB (Drug Gene Interaction Database)EDARADD
DoCM (Curated mutations)EDARADD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EDARADD (select a term)
intoGenEDARADD
Cancer3DEDARADD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM129490    224900    606603    614940    614941   
Orphanet7026    7027    14371   
MedgenEDARADD
Genetic Testing Registry EDARADD
NextProtQ8WWZ3 [Medical]
TSGene128178
GENETestsEDARADD
Target ValidationEDARADD
Huge Navigator EDARADD [HugePedia]
snp3D : Map Gene to Disease128178
BioCentury BCIQEDARADD
ClinGenEDARADD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128178
Chemical/Pharm GKB GenePA27603
Clinical trialEDARADD
Miscellaneous
canSAR (ICR)EDARADD (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEDARADD
EVEXEDARADD
GoPubMedEDARADD
iHOPEDARADD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Aug 1 17:00:08 CEST 2017

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