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EDDM3A (epididymal protein 3A)

Identity

Alias_namesFAM12A
family with sequence similarity 12, member A
Alias_symbol (synonym)HE3-ALPHA
Other aliasEP3A
HE3A
HE3ALPHA
RAM1
HGNC (Hugo) EDDM3A
LocusID (NCBI) 10876
Atlas_Id 62725
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 20745940 and ends at 20748380 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EDDM3A   16978
Cards
Entrez_Gene (NCBI)EDDM3A  10876  epididymal protein 3A
AliasesEP3A; FAM12A; HE3-ALPHA; HE3A; 
HE3ALPHA; RAM1
GeneCards (Weizmann)EDDM3A
Ensembl hg19 (Hinxton)ENSG00000181562 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181562 [Gene_View]  chr14:20745940-20748380 [Contig_View]  EDDM3A [Vega]
ICGC DataPortalENSG00000181562
TCGA cBioPortalEDDM3A
AceView (NCBI)EDDM3A
Genatlas (Paris)EDDM3A
WikiGenes10876
SOURCE (Princeton)EDDM3A
Genetics Home Reference (NIH)EDDM3A
Genomic and cartography
GoldenPath hg38 (UCSC)EDDM3A  -     chr14:20745940-20748380 +  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EDDM3A  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblEDDM3A - 14q11.2 [CytoView hg19]  EDDM3A - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBIEDDM3A [Mapview hg19]  EDDM3A [Mapview hg38]
OMIM611580   
Gene and transcription
Genbank (Entrez)AA769825 BC069407 BC096698 BC096731 BC098164
RefSeq transcript (Entrez)NM_006683
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EDDM3A
Cluster EST : UnigeneHs.304757 [ NCBI ]
CGAP (NCI)Hs.304757
Alternative Splicing GalleryENSG00000181562
Gene ExpressionEDDM3A [ NCBI-GEO ]   EDDM3A [ EBI - ARRAY_EXPRESS ]   EDDM3A [ SEEK ]   EDDM3A [ MEM ]
Gene Expression Viewer (FireBrowse)EDDM3A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10876
GTEX Portal (Tissue expression)EDDM3A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14507   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14507  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14507
Splice isoforms : SwissVarQ14507
PhosPhoSitePlusQ14507
Domains : Interpro (EBI)EDDM3A    RNaseA_domain   
Domain families : Pfam (Sanger)RnaseA (PF00074)   
Domain families : Pfam (NCBI)pfam00074   
Conserved Domain (NCBI)EDDM3A
DMDM Disease mutations10876
Blocks (Seattle)EDDM3A
SuperfamilyQ14507
Human Protein AtlasENSG00000181562
Peptide AtlasQ14507
HPRD13289
IPIIPI00031385   
Protein Interaction databases
DIP (DOE-UCLA)Q14507
IntAct (EBI)Q14507
FunCoupENSG00000181562
BioGRIDEDDM3A
STRING (EMBL)EDDM3A
ZODIACEDDM3A
Ontologies - Pathways
QuickGOQ14507
Ontology : AmiGOextracellular space  sperm displacement  
Ontology : EGO-EBIextracellular space  sperm displacement  
NDEx NetworkEDDM3A
Atlas of Cancer Signalling NetworkEDDM3A
Wikipedia pathwaysEDDM3A
Orthology - Evolution
OrthoDB10876
GeneTree (enSembl)ENSG00000181562
Phylogenetic Trees/Animal Genes : TreeFamEDDM3A
HOVERGENQ14507
HOGENOMQ14507
Homologs : HomoloGeneEDDM3A
Homology/Alignments : Family Browser (UCSC)EDDM3A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEDDM3A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EDDM3A
dbVarEDDM3A
ClinVarEDDM3A
1000_GenomesEDDM3A 
Exome Variant ServerEDDM3A
ExAC (Exome Aggregation Consortium)EDDM3A (select the gene name)
Genetic variants : HAPMAP10876
Genomic Variants (DGV)EDDM3A [DGVbeta]
DECIPHEREDDM3A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEDDM3A 
Mutations
ICGC Data PortalEDDM3A 
TCGA Data PortalEDDM3A 
Broad Tumor PortalEDDM3A
OASIS PortalEDDM3A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEDDM3A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEDDM3A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EDDM3A
DgiDB (Drug Gene Interaction Database)EDDM3A
DoCM (Curated mutations)EDDM3A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EDDM3A (select a term)
intoGenEDDM3A
Cancer3DEDDM3A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611580   
Orphanet
MedgenEDDM3A
Genetic Testing Registry EDDM3A
NextProtQ14507 [Medical]
TSGene10876
GENETestsEDDM3A
Target ValidationEDDM3A
Huge Navigator EDDM3A [HugePedia]
snp3D : Map Gene to Disease10876
BioCentury BCIQEDDM3A
ClinGenEDDM3A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10876
Chemical/Pharm GKB GenePA165478869
Clinical trialEDDM3A
Miscellaneous
canSAR (ICR)EDDM3A (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEDDM3A
EVEXEDDM3A
GoPubMedEDDM3A
iHOPEDDM3A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:14:04 CEST 2017

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