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EDDM3B (epididymal protein 3B)

Identity

Alias_namesFAM12B
family with sequence similarity 12, member B (epididymal)
Alias_symbol (synonym)HE3-BETA
Other aliasEP3B
HE3B
RAM2
HGNC (Hugo) EDDM3B
LocusID (NCBI) 64184
Atlas_Id 62726
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 21236586 and ends at 21239107 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EDDM3B   19223
Cards
Entrez_Gene (NCBI)EDDM3B  64184  epididymal protein 3B
AliasesEP3B; FAM12B; HE3-BETA; HE3B; 
RAM2
GeneCards (Weizmann)EDDM3B
Ensembl hg19 (Hinxton)ENSG00000181552 [Gene_View]  chr14:21236586-21239107 [Contig_View]  EDDM3B [Vega]
Ensembl hg38 (Hinxton)ENSG00000181552 [Gene_View]  chr14:21236586-21239107 [Contig_View]  EDDM3B [Vega]
ICGC DataPortalENSG00000181552
TCGA cBioPortalEDDM3B
AceView (NCBI)EDDM3B
Genatlas (Paris)EDDM3B
WikiGenes64184
SOURCE (Princeton)EDDM3B
Genetics Home Reference (NIH)EDDM3B
Genomic and cartography
GoldenPath hg19 (UCSC)EDDM3B  -     chr14:21236586-21239107 +  14q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)EDDM3B  -     14q11.2   [Description]    (hg38-Dec_2013)
EnsemblEDDM3B - 14q11.2 [CytoView hg19]  EDDM3B - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBIEDDM3B [Mapview hg19]  EDDM3B [Mapview hg38]
OMIM611582   
Gene and transcription
Genbank (Entrez)AI075915 AY358865 BC128030 BX112699 X76386
RefSeq transcript (Entrez)NM_022360
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)EDDM3B
Cluster EST : UnigeneHs.525202 [ NCBI ]
CGAP (NCI)Hs.525202
Alternative Splicing GalleryENSG00000181552
Gene ExpressionEDDM3B [ NCBI-GEO ]   EDDM3B [ EBI - ARRAY_EXPRESS ]   EDDM3B [ SEEK ]   EDDM3B [ MEM ]
Gene Expression Viewer (FireBrowse)EDDM3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64184
GTEX Portal (Tissue expression)EDDM3B
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56851   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP56851  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP56851
Splice isoforms : SwissVarP56851
PhosPhoSitePlusP56851
Domains : Interpro (EBI)EDDM3B    RNaseA_domain   
Domain families : Pfam (Sanger)RnaseA (PF00074)   
Domain families : Pfam (NCBI)pfam00074   
Conserved Domain (NCBI)EDDM3B
DMDM Disease mutations64184
Blocks (Seattle)EDDM3B
SuperfamilyP56851
Human Protein AtlasENSG00000181552
Peptide AtlasP56851
HPRD13290
IPIIPI00011596   
Protein Interaction databases
DIP (DOE-UCLA)P56851
IntAct (EBI)P56851
FunCoupENSG00000181552
BioGRIDEDDM3B
STRING (EMBL)EDDM3B
ZODIACEDDM3B
Ontologies - Pathways
QuickGOP56851
Ontology : AmiGOmolecular_function  protein binding  extracellular region  
Ontology : EGO-EBImolecular_function  protein binding  extracellular region  
NDEx NetworkEDDM3B
Atlas of Cancer Signalling NetworkEDDM3B
Wikipedia pathwaysEDDM3B
Orthology - Evolution
OrthoDB64184
GeneTree (enSembl)ENSG00000181552
Phylogenetic Trees/Animal Genes : TreeFamEDDM3B
HOVERGENP56851
HOGENOMP56851
Homologs : HomoloGeneEDDM3B
Homology/Alignments : Family Browser (UCSC)EDDM3B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEDDM3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EDDM3B
dbVarEDDM3B
ClinVarEDDM3B
1000_GenomesEDDM3B 
Exome Variant ServerEDDM3B
ExAC (Exome Aggregation Consortium)EDDM3B (select the gene name)
Genetic variants : HAPMAP64184
Genomic Variants (DGV)EDDM3B [DGVbeta]
DECIPHER (Syndromes)14:21236586-21239107  ENSG00000181552
CONAN: Copy Number AnalysisEDDM3B 
Mutations
ICGC Data PortalEDDM3B 
TCGA Data PortalEDDM3B 
Broad Tumor PortalEDDM3B
OASIS PortalEDDM3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEDDM3B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEDDM3B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EDDM3B
DgiDB (Drug Gene Interaction Database)EDDM3B
DoCM (Curated mutations)EDDM3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EDDM3B (select a term)
intoGenEDDM3B
Cancer3DEDDM3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611582   
Orphanet
MedgenEDDM3B
Genetic Testing Registry EDDM3B
NextProtP56851 [Medical]
TSGene64184
GENETestsEDDM3B
Huge Navigator EDDM3B [HugePedia]
snp3D : Map Gene to Disease64184
BioCentury BCIQEDDM3B
ClinGenEDDM3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64184
Chemical/Pharm GKB GenePA165478900
Clinical trialEDDM3B
Miscellaneous
canSAR (ICR)EDDM3B (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEDDM3B
EVEXEDDM3B
GoPubMedEDDM3B
iHOPEDDM3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:02:30 CET 2017

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