| Nomenclature | | HGNC (Hugo) | EDF1 3164 |
| Entrez_Gene (NCBI) | EDF1 8721 endothelial differentiation-related factor 1 |
| Cards | | GeneCards (Weizmann) | EDF1 |
| Ensembl (Hinxton) | ENSG00000107223 [Gene_View] chr9:139756571-139760738 [Contig_View] EDF1 [Vega] |
| AceView (NCBI) | EDF1 |
| Genatlas (Paris) | EDF1 |
| SOURCE (Stanford) | NM_003792 NM_153200 |
| Genomic and cartography | | GoldenPath (UCSC) | EDF1 - 9q34.3 chr9:139756571-139760738 - 9q34.3 [Description] (hg19-Feb_2009) |
| Ensembl | EDF1 - 9q34.3 [CytoView] |
| Mapping of homologs : NCBI | EDF1 [Mapview] |
| OMIM | 605107 |
| Gene and transcription |
| Genbank (Entrez) | AB002282 AB002283 BC015500 BT009863 CR541914 |
| RefSeq transcript (SRS) | NM_003792 NM_153200 |
| RefSeq transcript (Entrez) | NM_003792 NM_153200 |
| RefSeq genomic (SRS) | AC_000141 NC_000009 NC_018920 NG_029208 NT_024000 NW_001839245 NW_004078061 |
| RefSeq genomic (Entrez) | AC_000141 NC_000009 NC_018920 NG_029208 NT_024000 NW_001839245 NW_004078061 |
| Consensus coding sequences : CCDS (NCBI) | EDF1 |
| Cluster EST : Unigene | Hs.174050 [ SRS ] Hs.174050 [ NCBI ] |
| CGAP (NCI) | Hs.174050 |
| Alternative Splicing : Fast-db (Paris) | GSHG0031288 |
| Alternative Splicing Gallery | ENSG00000107223 |
| Gene Expression | EDF1 [ NCBI-GEO ] EDF1 [ EBI - ARRAY_EXPRESS ] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | O60869 (SRS) O60869 (Uniprot) |
| NextProt | O60869 |
| With graphics : InterPro | O60869 |
| Splice isoforms : SwissVar | O60869(Swissvar) |
| Domaine pattern : Prosite (SRS) | HTH_CROC1 (PS50943) |
| Domaine pattern : Prosite (Expaxy) | HTH_CROC1 (PS50943) |
| Domains : Interpro (SRS) | HTH_3 Lambda_DNA-bd_dom MBF1_N |
| Domains : Interpro (EBI) | HTH_3 Lambda_DNA-bd_dom MBF1_N |
| Related proteins : CluSTr | O60869 |
| Domain families : Pfam (SRS) | HTH_3 (PF01381) MBF1 (PF08523) |
| Domain families : Pfam (Sanger) | HTH_3 (PF01381) MBF1 (PF08523) |
| Domain families : Pfam (NCBI) | pfam01381 pfam08523 |
| Domain families : Smart (EMBL) | HTH_XRE (SM00530) |
| DMDM | 8721 |
| Blocks (Seattle) | O60869 |
| PDB (SRS) | 1X57 |
| PDB (PDBSum) | 1X57 |
| PDB (IMB) | 1X57 |
| PDB (RSDB) | 1X57 |
| Human Protein Atlas | ENSG00000107223 |
| HPRD | 09235 |
| IPI | IPI00021570 IPI00006362 IPI00640567 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | O60869 |
| IntAct (EBI) | O60869 |
| FunCoup | ENSG00000107223 |
| REACTOME | EDF1 |
| Protein Interaction Database | 8721 |
| BioGRID | EDF1 |
| InParanoid | O60869 |
| Interologous Interaction database | O60869 |
| IntegromeDB | EDF1 |
| Polymorphism : SNP, mutations, diseases | | SNP Single Nucleotide Polymorphism (NCBI) | EDF1 |
| SNP (GeneSNP Utah) | EDF1 |
| SNP : HGBase | EDF1 |
| Genetic variants : HAPMAP | EDF1 |
| Somatic Mutations in Cancer : COSMIC | EDF1 |
| CONAN: Copy Number Analysis | EDF1 |
| Mutations and Diseases : HGMD | EDF1 |
| OMIM | 605107 |
| GENETests | 605107 |
| Disease Genetic Association | EDF1 |
| Huge Navigator |
EDF1 [HugePedia] EDF1 [HugeCancerGEM] |
| Genomic Variants | EDF1 EDF1 [DGVbeta] |
| snp3D : Map Gene to Disease | 8721 |
| General knowledge |
|---|
| Homologs : HomoloGene | EDF1 |
| Homology/Alignments : Family Browser (UCSC) | EDF1 |
| Phylogenetic Trees/Animal Genes : TreeFam | EDF1 |
| Chemical/Protein Interactions : CTD | 8721 |
| Chemical/Pharm GKB Gene | PA27604 |
| Clinical trial | EDF1 |
| Cancer Resource (Charite) | ENSG00000107223 |
| Ontology : AmiGO | sequence-specific DNA binding transcription factor activity transcription coactivator activity histone acetyltransferase activity protein binding calmodulin binding intracellular nucleus nucleus nucleus transcription factor TFIID complex nucleolus cytoplasm cytoplasm transcription, DNA-dependent regulation of transcription, DNA-dependent multicellular organismal development methyltransferase activity regulation of lipid metabolic process positive regulation of DNA binding sequence-specific DNA binding endothelial cell differentiation positive regulation of transcription, DNA-dependent |
| Ontology : EGO-EBI | sequence-specific DNA binding transcription factor activity transcription coactivator activity histone acetyltransferase activity protein binding calmodulin binding intracellular nucleus nucleus nucleus transcription factor TFIID complex nucleolus cytoplasm cytoplasm transcription, DNA-dependent regulation of transcription, DNA-dependent multicellular organismal development methyltransferase activity regulation of lipid metabolic process positive regulation of DNA binding sequence-specific DNA binding endothelial cell differentiation positive regulation of transcription, DNA-dependent |
| Other databases |
| Probes |
|---|
| Litterature | | PubMed | 21 Pubmed reference(s) in Entrez |
| PubGene | EDF1 |
| iHOP | EDF1 |
