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EDIL3 (EGF-like repeats and discoidin I-like domains 3)

Identity

Other namesDEL1
HGNC (Hugo) EDIL3
LocusID (NCBI) 10085
Location 5q14.3
Location_base_pair Starts at 83238126 and ends at 83680611 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)EDIL3   3173
Entrez_Gene (NCBI)EDIL3  10085  EGF-like repeats and discoidin I-like domains 3
Cards
GeneCards (Weizmann)EDIL3
Ensembl (Hinxton)ENSG00000164176 [Gene_View]  chr5:83238126-83680611 [Contig_View]  EDIL3 [Vega]
AceView (NCBI)EDIL3
Genatlas (Paris)EDIL3
SOURCE (Stanford)NM_005711
Genomic and cartography
GoldenPath (UCSC)EDIL3  -  5q14.3   chr5:83238126-83680611 -  5q14.3   [Description]    (hg19-Feb_2009)
EnsemblEDIL3 - 5q14.3 [CytoView]
Mapping of homologs : NCBIEDIL3 [Mapview]
OMIM606018   
Gene and transcription
Genbank (Entrez)AA053720 AK312858 BC030828 BC053656 BX648583
RefSeq transcript (SRS)NM_005711
RefSeq transcript (Entrez)NM_005711
RefSeq genomic (SRS)AC_000137 NC_000005 NC_018916 NT_006713 NW_001838951 NW_004078023
RefSeq genomic (Entrez)AC_000137 NC_000005 NC_018916 NT_006713 NW_001838951 NW_004078023
Consensus coding sequences : CCDS (NCBI)EDIL3
Cluster EST : UnigeneHs.482730 [ SRS ] Hs.482730 [ NCBI ]
CGAP (NCI)Hs.482730
Alternative Splicing : Fast-db (Paris)GSHG0024926
Alternative Splicing GalleryENSG00000164176
Gene ExpressionEDIL3 [ NCBI-GEO ]   EDIL3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43854 (SRS) O43854 (Uniprot)
NextProtO43854
With graphics : InterProO43854
Splice isoforms : SwissVarO43854(Swissvar)
Domaine pattern : Prosite (SRS)ASX_HYDROXYL (PS00010)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    EGF_CA (PS01187)    FA58C_1 (PS01285)    FA58C_2 (PS01286)    FA58C_3 (PS50022)   
Domaine pattern : Prosite (Expaxy)ASX_HYDROXYL (PS00010)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    EGF_CA (PS01187)    FA58C_1 (PS01285)    FA58C_2 (PS01286)    FA58C_3 (PS50022)   
Domains : Interpro (SRS)Coagulation_fac_5/8-C_type_dom    EG-like_dom    EGF-like_Ca-bd    EGF-like_CS    EGF-type_Asp/Asn_hydroxyl_site    EGF_Ca-bd_CS    Galactose-bd-like   
Domains : Interpro (EBI)Coagulation_fac_5/8-C_type_dom    EG-like_dom    EGF-like_Ca-bd    EGF-like_CS    EGF-type_Asp/Asn_hydroxyl_site    EGF_Ca-bd_CS    Galactose-bd-like   
Related proteins : CluSTrO43854
Domain families : Pfam (SRS)EGF (PF00008)    F5_F8_type_C (PF00754)   
Domain families : Pfam (Sanger)EGF (PF00008)    F5_F8_type_C (PF00754)   
Domain families : Pfam (NCBI)pfam00008    pfam00754   
Domain families : Smart (EMBL)EGF (SM00181)  EGF_CA (SM00179)  FA58C (SM00231)  
DMDM10085
Blocks (Seattle)O43854
PDB (SRS)4D90   
PDB (PDBSum)4D90   
PDB (IMB)4D90   
PDB (RSDB)4D90   
Human Protein AtlasENSG00000164176
HPRD09350
IPIIPI00306046   IPI00399105   
Protein Interaction databases
DIP (DOE-UCLA)O43854
IntAct (EBI)O43854
FunCoupENSG00000164176
REACTOMEEDIL3
Protein Interaction Database10085
BioGRIDEDIL3
InParanoidO43854
Interologous Interaction database O43854
IntegromeDBEDIL3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)EDIL3
SNP (GeneSNP Utah)EDIL3
SNP : HGBaseEDIL3
Genetic variants : HAPMAPEDIL3
Somatic Mutations in Cancer : COSMICEDIL3 
CONAN: Copy Number AnalysisEDIL3 
Mutations and Diseases : HGMDEDIL3
OMIM606018   
GENETests606018   
Disease Genetic AssociationEDIL3
Huge Navigator EDIL3 [HugePedia]  EDIL3 [HugeCancerGEM]
Genomic VariantsEDIL3  EDIL3 [DGVbeta]
snp3D : Map Gene to Disease10085
General knowledge
Homologs : HomoloGeneEDIL3
Homology/Alignments : Family Browser (UCSC)EDIL3
Phylogenetic Trees/Animal Genes : TreeFamEDIL3
Chemical/Protein Interactions : CTD10085
Chemical/Pharm GKB GenePA27613
Clinical trialEDIL3
Cancer Resource (Charite)ENSG00000164176
Ontology : AmiGOintegrin binding  calcium ion binding  cell adhesion  multicellular organismal development  positive regulation of cell-substrate adhesion  extracellular vesicular exosome  
Ontology : EGO-EBIintegrin binding  calcium ion binding  cell adhesion  multicellular organismal development  positive regulation of cell-substrate adhesion  extracellular vesicular exosome  
Other databases
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
PubGeneEDIL3
iHOPEDIL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:19:31 CEST 2013
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