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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

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EDNRB (endothelin receptor type B)

Identity

Other namesABCDS
ET-B
ET-BR
ETB
ETBR
ETRB
HSCR
HSCR2
WS4A
HGNC (Hugo) EDNRB
LocusID (NCBI) 1910
Location 13q22.3
Location_base_pair Starts at 78469616 and ends at 78549664 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)EDNRB   3180
Cards
Entrez_Gene (NCBI)EDNRB  1910  endothelin receptor type B
GeneCards (Weizmann)EDNRB
Ensembl hg19 (Hinxton)ENSG00000136160 [Gene_View]  chr13:78469616-78549664 [Contig_View]  EDNRB [Vega]
Ensembl hg38 (Hinxton)ENSG00000136160 [Gene_View]  chr13:78469616-78549664 [Contig_View]  EDNRB [Vega]
ICGC DataPortalENSG00000136160
cBioPortalEDNRB
AceView (NCBI)EDNRB
Genatlas (Paris)EDNRB
WikiGenes1910
SOURCE (Princeton)EDNRB
Genomic and cartography
GoldenPath hg19 (UCSC)EDNRB  -     chr13:78469616-78549664 -  13q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)EDNRB  -     13q22.3   [Description]    (hg38-Dec_2013)
EnsemblEDNRB - 13q22.3 [CytoView hg19]  EDNRB - 13q22.3 [CytoView hg38]
Mapping of homologs : NCBIEDNRB [Mapview hg19]  EDNRB [Mapview hg38]
OMIM131244   277580   600155   600501   
Gene and transcription
Genbank (Entrez)AB209198 AF114165 AK290699 AY275463 BC014472
RefSeq transcript (Entrez)NM_000115 NM_001122659 NM_001201397 NM_003991
RefSeq genomic (Entrez)AC_000145 NC_000013 NC_018924 NG_011630 NT_024524 NW_001838082 NW_004929388
Consensus coding sequences : CCDS (NCBI)EDNRB
Cluster EST : UnigeneHs.743195 [ NCBI ]
CGAP (NCI)Hs.743195
Alternative Splicing : Fast-db (Paris)GSHG0008557
Alternative Splicing GalleryENSG00000136160
Gene ExpressionEDNRB [ NCBI-GEO ]     EDNRB [ SEEK ]   EDNRB [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP24530 (Uniprot)
NextProtP24530  [Medical]
With graphics : InterProP24530
Splice isoforms : SwissVarP24530 (Swissvar)
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)Endthln_rcpt    ETB_rcpt    GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Related proteins : CluSTrP24530
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
DMDM Disease mutations1910
Blocks (Seattle)P24530
Human Protein AtlasENSG00000136160
Peptide AtlasP24530
HPRD08834
IPIIPI00029123   IPI00218197   IPI00412464   
Protein Interaction databases
DIP (DOE-UCLA)P24530
IntAct (EBI)P24530
FunCoupENSG00000136160
BioGRIDEDNRB
IntegromeDBEDNRB
STRING (EMBL)EDNRB
Ontologies - Pathways
QuickGOP24530
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  negative regulation of transcription from RNA polymerase II promoter  neural crest cell migration  positive regulation of protein phosphorylation  endothelin receptor activity  endothelin receptor activity  protein binding  plasma membrane  integral component of plasma membrane  regulation of pH  cell surface receptor signaling pathway  negative regulation of adenylate cyclase activity  phospholipase C-activating G-protein coupled receptor signaling pathway  positive regulation of cytosolic calcium ion concentration  nervous system development  peripheral nervous system development  posterior midgut development  aging  regulation of blood pressure  positive regulation of cell proliferation  negative regulation of neuron maturation  response to organic cyclic compound  vein smooth muscle contraction  peptide hormone binding  sensory perception of pain  cGMP-mediated signaling  melanocyte differentiation  regulation of fever generation  type 1 angiotensin receptor binding  nuclear membrane  negative regulation of cellular protein metabolic process  enteric smooth muscle cell differentiation  positive regulation of urine volume  positive regulation of renal sodium excretion  epithelial fluid transport  vasoconstriction  vasodilation  negative regulation of apoptotic process  membrane raft  macrophage chemotaxis  response to pain  enteric nervous system development  regulation of epithelial cell proliferation  regulation of sensory perception of pain  positive regulation of penile erection  cellular response to lipopolysaccharide  endothelin receptor signaling pathway  endothelin receptor signaling pathway  endothelin receptor signaling pathway  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  negative regulation of transcription from RNA polymerase II promoter  neural crest cell migration  positive regulation of protein phosphorylation  endothelin receptor activity  endothelin receptor activity  protein binding  plasma membrane  integral component of plasma membrane  regulation of pH  cell surface receptor signaling pathway  negative regulation of adenylate cyclase activity  phospholipase C-activating G-protein coupled receptor signaling pathway  positive regulation of cytosolic calcium ion concentration  nervous system development  peripheral nervous system development  posterior midgut development  aging  regulation of blood pressure  positive regulation of cell proliferation  negative regulation of neuron maturation  response to organic cyclic compound  vein smooth muscle contraction  peptide hormone binding  sensory perception of pain  cGMP-mediated signaling  melanocyte differentiation  regulation of fever generation  type 1 angiotensin receptor binding  nuclear membrane  negative regulation of cellular protein metabolic process  enteric smooth muscle cell differentiation  positive regulation of urine volume  positive regulation of renal sodium excretion  epithelial fluid transport  vasoconstriction  vasodilation  negative regulation of apoptotic process  membrane raft  macrophage chemotaxis  response to pain  enteric nervous system development  regulation of epithelial cell proliferation  regulation of sensory perception of pain  positive regulation of penile erection  cellular response to lipopolysaccharide  endothelin receptor signaling pathway  endothelin receptor signaling pathway  endothelin receptor signaling pathway  
Pathways : BIOCARTARole of EGF Receptor Transactivation by GPCRs in Cardiac Hypertrophy [Genes]   
Pathways : KEGGCalcium signaling pathway    Neuroactive ligand-receptor interaction    Melanogenesis   
Protein Interaction DatabaseEDNRB
DoCM (Curated mutations)EDNRB
Wikipedia pathwaysEDNRB
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerEDNRB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EDNRB
dbVarEDNRB
ClinVarEDNRB
1000_GenomesEDNRB 
Exome Variant ServerEDNRB
SNP (GeneSNP Utah)EDNRB
SNP : HGBaseEDNRB
Genetic variants : HAPMAPEDNRB
Genomic Variants (DGV)EDNRB [DGVbeta]
Mutations
ICGC Data PortalENSG00000136160 
Somatic Mutations in Cancer : COSMICEDNRB 
CONAN: Copy Number AnalysisEDNRB 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)13:78469616-78549664
Mutations and Diseases : HGMDEDNRB
OMIM131244    277580    600155    600501   
MedgenEDNRB
NextProtP24530 [Medical]
GENETestsEDNRB
Disease Genetic AssociationEDNRB
Huge Navigator EDNRB [HugePedia]  EDNRB [HugeCancerGEM]
snp3D : Map Gene to Disease1910
DGIdb (Drug Gene Interaction db)EDNRB
General knowledge
Homologs : HomoloGeneEDNRB
Homology/Alignments : Family Browser (UCSC)EDNRB
Phylogenetic Trees/Animal Genes : TreeFamEDNRB
Chemical/Protein Interactions : CTD1910
Chemical/Pharm GKB GenePA27618
Clinical trialEDNRB
Cancer Resource (Charite)ENSG00000136160
Other databases
Probes
Litterature
PubMed173 Pubmed reference(s) in Entrez
CoreMineEDNRB
GoPubMedEDNRB
iHOPEDNRB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 15:35:02 CET 2015

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