Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

EDRF1 (erythroid differentiation regulatory factor 1)

Identity

Alias_namesC10orf137
chromosome 10 open reading frame 137
Alias_symbol (synonym)DKFZp586F1019
FLJ21617
Other alias
HGNC (Hugo) EDRF1
LocusID (NCBI) 26098
Atlas_Id 62730
Location 10q26.2  [Link to chromosome band 10q26]
Location_base_pair Starts at 125719515 and ends at 125764143 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BCCIP (10q26.2) / EDRF1 (10q26.13)CASP7 (10q25.3) / EDRF1 (10q26.13)EDRF1 (10q26.13) / CNTN2 (1q32.1)
RPL23 (17q12) / EDRF1 (10q26.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(10;10)(q25;q26) CASP7/EDRF1
t(10;10)(q26;q26) BCCIP/EDRF1

External links

Nomenclature
HGNC (Hugo)EDRF1   24640
Cards
Entrez_Gene (NCBI)EDRF1  26098  erythroid differentiation regulatory factor 1
AliasesC10orf137
GeneCards (Weizmann)EDRF1
Ensembl hg19 (Hinxton)ENSG00000107938 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107938 [Gene_View]  ENSG00000107938 [Sequence]  chr10:125719515-125764143 [Contig_View]  EDRF1 [Vega]
ICGC DataPortalENSG00000107938
TCGA cBioPortalEDRF1
AceView (NCBI)EDRF1
Genatlas (Paris)EDRF1
WikiGenes26098
SOURCE (Princeton)EDRF1
Genetics Home Reference (NIH)EDRF1
Genomic and cartography
GoldenPath hg38 (UCSC)EDRF1  -     chr10:125719515-125764143 +  10q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EDRF1  -     10q26.2   [Description]    (hg19-Feb_2009)
EnsemblEDRF1 - 10q26.2 [CytoView hg19]  EDRF1 - 10q26.2 [CytoView hg38]
Mapping of homologs : NCBIEDRF1 [Mapview hg19]  EDRF1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF040247 AK025270 AK091507 AK314958 AL050102
RefSeq transcript (Entrez)NM_001202438 NM_015608 NM_030897
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EDRF1
Cluster EST : UnigeneHs.468688 [ NCBI ]
CGAP (NCI)Hs.468688
Alternative Splicing GalleryENSG00000107938
Gene ExpressionEDRF1 [ NCBI-GEO ]   EDRF1 [ EBI - ARRAY_EXPRESS ]   EDRF1 [ SEEK ]   EDRF1 [ MEM ]
Gene Expression Viewer (FireBrowse)EDRF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26098
GTEX Portal (Tissue expression)EDRF1
Human Protein AtlasENSG00000107938-EDRF1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3B7T1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3B7T1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3B7T1
Splice isoforms : SwissVarQ3B7T1
PhosPhoSitePlusQ3B7T1
Domains : Interpro (EBI)TPR-like_helical_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)EDRF1
DMDM Disease mutations26098
Blocks (Seattle)EDRF1
SuperfamilyQ3B7T1
Human Protein Atlas [tissue]ENSG00000107938-EDRF1 [tissue]
Peptide AtlasQ3B7T1
HPRD10694
IPIIPI00761051   IPI00746361   IPI00844267   IPI00914869   IPI00386825   IPI00386227   IPI00008870   IPI00978339   IPI00979564   IPI00979022   
Protein Interaction databases
DIP (DOE-UCLA)Q3B7T1
IntAct (EBI)Q3B7T1
FunCoupENSG00000107938
BioGRIDEDRF1
STRING (EMBL)EDRF1
ZODIACEDRF1
Ontologies - Pathways
QuickGOQ3B7T1
Ontology : AmiGOnucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBInucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkEDRF1
Atlas of Cancer Signalling NetworkEDRF1
Wikipedia pathwaysEDRF1
Orthology - Evolution
OrthoDB26098
GeneTree (enSembl)ENSG00000107938
Phylogenetic Trees/Animal Genes : TreeFamEDRF1
HOVERGENQ3B7T1
HOGENOMQ3B7T1
Homologs : HomoloGeneEDRF1
Homology/Alignments : Family Browser (UCSC)EDRF1
Gene fusions - Rearrangements
Fusion : QuiverEDRF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEDRF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EDRF1
dbVarEDRF1
ClinVarEDRF1
1000_GenomesEDRF1 
Exome Variant ServerEDRF1
ExAC (Exome Aggregation Consortium)ENSG00000107938
GNOMAD BrowserENSG00000107938
Varsome BrowserEDRF1
Genetic variants : HAPMAP26098
Genomic Variants (DGV)EDRF1 [DGVbeta]
DECIPHEREDRF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEDRF1 
Mutations
ICGC Data PortalEDRF1 
TCGA Data PortalEDRF1 
Broad Tumor PortalEDRF1
OASIS PortalEDRF1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDEDRF1
BioMutasearch EDRF1
DgiDB (Drug Gene Interaction Database)EDRF1
DoCM (Curated mutations)EDRF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EDRF1 (select a term)
intoGenEDRF1
Cancer3DEDRF1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETEDRF1
MedgenEDRF1
Genetic Testing Registry EDRF1
NextProtQ3B7T1 [Medical]
TSGene26098
GENETestsEDRF1
Target ValidationEDRF1
Huge Navigator EDRF1 [HugePedia]
snp3D : Map Gene to Disease26098
BioCentury BCIQEDRF1
ClinGenEDRF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26098
Chemical/Pharm GKB GenePA134873666
Clinical trialEDRF1
Miscellaneous
canSAR (ICR)EDRF1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEDRF1
EVEXEDRF1
GoPubMedEDRF1
iHOPEDRF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:43:33 CEST 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.