Atlas of Genetics and Cytogenetics in Oncology and Haematology


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EEF1AKMT1 (EEF1A lysine methyltransferase 1)

Identity

Alias_namesN6AMT2
N-6 adenine-specific DNA methyltransferase 2 (putative)
Other aliasESP13
HGNC (Hugo) EEF1AKMT1
LocusID (NCBI) 221143
Atlas_Id 77829
Location 13q12.11  [Link to chromosome band 13q12]
Location_base_pair Starts at 20728931 and ends at 20773958 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RANBP3 (19p13.3) / EEF1AKMT1 (13q12.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EEF1AKMT1   27351
Cards
Entrez_Gene (NCBI)EEF1AKMT1  221143  EEF1A lysine methyltransferase 1
AliasesESP13; N6AMT2
GeneCards (Weizmann)EEF1AKMT1
Ensembl hg19 (Hinxton)ENSG00000150456 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150456 [Gene_View]  chr13:20728931-20773958 [Contig_View]  EEF1AKMT1 [Vega]
ICGC DataPortalENSG00000150456
TCGA cBioPortalEEF1AKMT1
AceView (NCBI)EEF1AKMT1
Genatlas (Paris)EEF1AKMT1
WikiGenes221143
SOURCE (Princeton)EEF1AKMT1
Genetics Home Reference (NIH)EEF1AKMT1
Genomic and cartography
GoldenPath hg38 (UCSC)EEF1AKMT1  -     chr13:20728931-20773958 -  13q12.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EEF1AKMT1  -     13q12.11   [Description]    (hg19-Feb_2009)
EnsemblEEF1AKMT1 - 13q12.11 [CytoView hg19]  EEF1AKMT1 - 13q12.11 [CytoView hg38]
Mapping of homologs : NCBIEEF1AKMT1 [Mapview hg19]  EEF1AKMT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK316604 AL597222 BC018091 DA514874 DQ823637
RefSeq transcript (Entrez)NM_001318939 NM_174928
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EEF1AKMT1
Cluster EST : UnigeneHs.26674 [ NCBI ]
CGAP (NCI)Hs.26674
Alternative Splicing GalleryENSG00000150456
Gene ExpressionEEF1AKMT1 [ NCBI-GEO ]   EEF1AKMT1 [ EBI - ARRAY_EXPRESS ]   EEF1AKMT1 [ SEEK ]   EEF1AKMT1 [ MEM ]
Gene Expression Viewer (FireBrowse)EEF1AKMT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221143
GTEX Portal (Tissue expression)EEF1AKMT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVE0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVE0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVE0
Splice isoforms : SwissVarQ8WVE0
PhosPhoSitePlusQ8WVE0
Domains : Interpro (EBI)DNA_methylase_N6_adenine_CS    Efm5    SAM-dependent_MTases   
Domain families : Pfam (Sanger)N6-adenineMlase (PF10237)   
Domain families : Pfam (NCBI)pfam10237   
Conserved Domain (NCBI)EEF1AKMT1
DMDM Disease mutations221143
Blocks (Seattle)EEF1AKMT1
SuperfamilyQ8WVE0
Human Protein AtlasENSG00000150456
Peptide AtlasQ8WVE0
HPRD14135
IPIIPI00103104   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVE0
IntAct (EBI)Q8WVE0
FunCoupENSG00000150456
BioGRIDEEF1AKMT1
STRING (EMBL)EEF1AKMT1
ZODIACEEF1AKMT1
Ontologies - Pathways
QuickGOQ8WVE0
Ontology : AmiGOnucleic acid binding  cytosol  protein methylation  methyltransferase activity  protein-lysine N-methyltransferase activity  protein-lysine N-methyltransferase activity  peptidyl-lysine methylation  extracellular exosome  
Ontology : EGO-EBInucleic acid binding  cytosol  protein methylation  methyltransferase activity  protein-lysine N-methyltransferase activity  protein-lysine N-methyltransferase activity  peptidyl-lysine methylation  extracellular exosome  
NDEx NetworkEEF1AKMT1
Atlas of Cancer Signalling NetworkEEF1AKMT1
Wikipedia pathwaysEEF1AKMT1
Orthology - Evolution
OrthoDB221143
GeneTree (enSembl)ENSG00000150456
Phylogenetic Trees/Animal Genes : TreeFamEEF1AKMT1
HOVERGENQ8WVE0
HOGENOMQ8WVE0
Homologs : HomoloGeneEEF1AKMT1
Homology/Alignments : Family Browser (UCSC)EEF1AKMT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEEF1AKMT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EEF1AKMT1
dbVarEEF1AKMT1
ClinVarEEF1AKMT1
1000_GenomesEEF1AKMT1 
Exome Variant ServerEEF1AKMT1
ExAC (Exome Aggregation Consortium)EEF1AKMT1 (select the gene name)
Genetic variants : HAPMAP221143
Genomic Variants (DGV)EEF1AKMT1 [DGVbeta]
DECIPHEREEF1AKMT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEEF1AKMT1 
Mutations
ICGC Data PortalEEF1AKMT1 
TCGA Data PortalEEF1AKMT1 
Broad Tumor PortalEEF1AKMT1
OASIS PortalEEF1AKMT1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDEEF1AKMT1
BioMutasearch EEF1AKMT1
DgiDB (Drug Gene Interaction Database)EEF1AKMT1
DoCM (Curated mutations)EEF1AKMT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EEF1AKMT1 (select a term)
intoGenEEF1AKMT1
Cancer3DEEF1AKMT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenEEF1AKMT1
Genetic Testing Registry EEF1AKMT1
NextProtQ8WVE0 [Medical]
TSGene221143
GENETestsEEF1AKMT1
Target ValidationEEF1AKMT1
Huge Navigator EEF1AKMT1 [HugePedia]
snp3D : Map Gene to Disease221143
BioCentury BCIQEEF1AKMT1
ClinGenEEF1AKMT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221143
Chemical/Pharm GKB GenePA162396671
Clinical trialEEF1AKMT1
Miscellaneous
canSAR (ICR)EEF1AKMT1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEEF1AKMT1
EVEXEEF1AKMT1
GoPubMedEEF1AKMT1
iHOPEEF1AKMT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:46:47 CEST 2017

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