Atlas of Genetics and Cytogenetics in Oncology and Haematology


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EEF1AKMT3 (EEF1A lysine methyltransferase 3)

Identity

Alias_namesFAM119B
METTL21B
family with sequence similarity 119, member B
methyltransferase like 21B
Alias_symbol (synonym)DKFZP586D0919
Other alias
HGNC (Hugo) EEF1AKMT3
LocusID (NCBI) 25895
Atlas_Id 79777
Location 12q14.1  [Link to chromosome band 12q14]
Location_base_pair Starts at 57772600 and ends at 57782541 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EEF1AKMT3   24936
Cards
Entrez_Gene (NCBI)EEF1AKMT3  25895  EEF1A lysine methyltransferase 3
AliasesFAM119B; METTL21B
GeneCards (Weizmann)EEF1AKMT3
Ensembl hg19 (Hinxton)ENSG00000123427 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123427 [Gene_View]  chr12:57772600-57782541 [Contig_View]  EEF1AKMT3 [Vega]
ICGC DataPortalENSG00000123427
TCGA cBioPortalEEF1AKMT3
AceView (NCBI)EEF1AKMT3
Genatlas (Paris)EEF1AKMT3
WikiGenes25895
SOURCE (Princeton)EEF1AKMT3
Genetics Home Reference (NIH)EEF1AKMT3
Genomic and cartography
GoldenPath hg38 (UCSC)EEF1AKMT3  -     chr12:57772600-57782541 +  12q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EEF1AKMT3  -     12q14.1   [Description]    (hg19-Feb_2009)
EnsemblEEF1AKMT3 - 12q14.1 [CytoView hg19]  EEF1AKMT3 - 12q14.1 [CytoView hg38]
Mapping of homologs : NCBIEEF1AKMT3 [Mapview hg19]  EEF1AKMT3 [Mapview hg38]
OMIM615258   
Gene and transcription
Genbank (Entrez)AF455816 AK024983 AK292276 AL050100 AM393242
RefSeq transcript (Entrez)NM_015433 NM_206914
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EEF1AKMT3
Cluster EST : UnigeneHs.632720 [ NCBI ]
CGAP (NCI)Hs.632720
Alternative Splicing GalleryENSG00000123427
Gene ExpressionEEF1AKMT3 [ NCBI-GEO ]   EEF1AKMT3 [ EBI - ARRAY_EXPRESS ]   EEF1AKMT3 [ SEEK ]   EEF1AKMT3 [ MEM ]
Gene Expression Viewer (FireBrowse)EEF1AKMT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25895
GTEX Portal (Tissue expression)EEF1AKMT3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AZ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96AZ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96AZ1
Splice isoforms : SwissVarQ96AZ1
Catalytic activity : Enzyme2.1.1.- [ Enzyme-Expasy ]   2.1.1.-2.1.1.- [ IntEnz-EBI ]   2.1.1.- [ BRENDA ]   2.1.1.- [ KEGG ]   
PhosPhoSitePlusQ96AZ1
Domains : Interpro (EBI)Methyltransf_16    SAM-dependent_MTases   
Domain families : Pfam (Sanger)Methyltransf_16 (PF10294)   
Domain families : Pfam (NCBI)pfam10294   
Conserved Domain (NCBI)EEF1AKMT3
DMDM Disease mutations25895
Blocks (Seattle)EEF1AKMT3
PDB (SRS)4QPN   
PDB (PDBSum)4QPN   
PDB (IMB)4QPN   
PDB (RSDB)4QPN   
Structural Biology KnowledgeBase4QPN   
SCOP (Structural Classification of Proteins)4QPN   
CATH (Classification of proteins structures)4QPN   
SuperfamilyQ96AZ1
Human Protein AtlasENSG00000123427
Peptide AtlasQ96AZ1
IPIIPI00100814   IPI00000350   IPI00184890   IPI01021586   IPI01025094   
Protein Interaction databases
DIP (DOE-UCLA)Q96AZ1
IntAct (EBI)Q96AZ1
FunCoupENSG00000123427
BioGRIDEEF1AKMT3
STRING (EMBL)EEF1AKMT3
ZODIACEEF1AKMT3
Ontologies - Pathways
QuickGOQ96AZ1
Ontology : AmiGOprotein binding  intracellular  cytoplasm  centrosome  methyltransferase activity  protein-lysine N-methyltransferase activity  peptidyl-lysine methylation  heat shock protein binding  protein complex  
Ontology : EGO-EBIprotein binding  intracellular  cytoplasm  centrosome  methyltransferase activity  protein-lysine N-methyltransferase activity  peptidyl-lysine methylation  heat shock protein binding  protein complex  
NDEx NetworkEEF1AKMT3
Atlas of Cancer Signalling NetworkEEF1AKMT3
Wikipedia pathwaysEEF1AKMT3
Orthology - Evolution
OrthoDB25895
GeneTree (enSembl)ENSG00000123427
Phylogenetic Trees/Animal Genes : TreeFamEEF1AKMT3
HOVERGENQ96AZ1
HOGENOMQ96AZ1
Homologs : HomoloGeneEEF1AKMT3
Homology/Alignments : Family Browser (UCSC)EEF1AKMT3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEEF1AKMT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EEF1AKMT3
dbVarEEF1AKMT3
ClinVarEEF1AKMT3
1000_GenomesEEF1AKMT3 
Exome Variant ServerEEF1AKMT3
ExAC (Exome Aggregation Consortium)EEF1AKMT3 (select the gene name)
Genetic variants : HAPMAP25895
Genomic Variants (DGV)EEF1AKMT3 [DGVbeta]
DECIPHEREEF1AKMT3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEEF1AKMT3 
Mutations
ICGC Data PortalEEF1AKMT3 
TCGA Data PortalEEF1AKMT3 
Broad Tumor PortalEEF1AKMT3
OASIS PortalEEF1AKMT3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDEEF1AKMT3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EEF1AKMT3
DgiDB (Drug Gene Interaction Database)EEF1AKMT3
DoCM (Curated mutations)EEF1AKMT3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EEF1AKMT3 (select a term)
intoGenEEF1AKMT3
Cancer3DEEF1AKMT3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615258   
Orphanet
MedgenEEF1AKMT3
Genetic Testing Registry EEF1AKMT3
NextProtQ96AZ1 [Medical]
TSGene25895
GENETestsEEF1AKMT3
Target ValidationEEF1AKMT3
Huge Navigator EEF1AKMT3 [HugePedia]
snp3D : Map Gene to Disease25895
BioCentury BCIQEEF1AKMT3
ClinGenEEF1AKMT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25895
Chemical/Pharm GKB GenePA145008445
Clinical trialEEF1AKMT3
Miscellaneous
canSAR (ICR)EEF1AKMT3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEEF1AKMT3
EVEXEEF1AKMT3
GoPubMedEEF1AKMT3
iHOPEEF1AKMT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:06:51 CEST 2017

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