Atlas of Genetics and Cytogenetics in Oncology and Haematology

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EEF1B2 (eukaryotic translation elongation factor 1 beta 2)

Identity

Other namesEEF1B
EEF1B1
EF1B
HGNC (Hugo) EEF1B2
LocusID (NCBI) 1933
Location 2q33.3
Location_base_pair Starts at 207024318 and ends at 207027653 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)EEF1B2   3208
Cards
Entrez_Gene (NCBI)EEF1B2  1933  eukaryotic translation elongation factor 1 beta 2
GeneCards (Weizmann)EEF1B2
Ensembl (Hinxton)ENSG00000114942 [Gene_View]  chr2:207024318-207027653 [Contig_View]  EEF1B2 [Vega]
ICGC DataPortalENSG00000114942
cBioPortalEEF1B2
AceView (NCBI)EEF1B2
Genatlas (Paris)EEF1B2
WikiGenes1933
SOURCE (Princeton)NM_001037663 NM_001959 NM_021121
Genomic and cartography
GoldenPath (UCSC)EEF1B2  -  2q33.3   chr2:207024318-207027653 +  2q33.3   [Description]    (hg19-Feb_2009)
EnsemblEEF1B2 - 2q33.3 [CytoView]
Mapping of homologs : NCBIEEF1B2 [Mapview]
OMIM600655   
Gene and transcription
Genbank (Entrez)AK291910 AK310096 BC000211 BC004931 BC029316
RefSeq transcript (Entrez)NM_001037663 NM_001959 NM_021121
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NG_009248 NT_005403 NW_001838863 NW_004929305
Consensus coding sequences : CCDS (NCBI)EEF1B2
Cluster EST : UnigeneHs.421608 [ NCBI ]
CGAP (NCI)Hs.421608
Alternative Splicing : Fast-db (Paris)GSHG0017136
Alternative Splicing GalleryENSG00000114942
Gene ExpressionEEF1B2 [ NCBI-GEO ]     EEF1B2 [ SEEK ]   EEF1B2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP24534 (Uniprot)
NextProtP24534  [Medical]
With graphics : InterProP24534
Splice isoforms : SwissVarP24534 (Swissvar)
Domaine pattern : Prosite (Expaxy)EF1BD_1 (PS00824)    EF1BD_2 (PS00825)    GST_CTER (PS50405)   
Domains : Interpro (EBI)EF-1_beta_acid_region_euk [organisation]   Glutathione-S-Trfase_C-like [organisation]   Transl_elong_EF1B/ribosomal_S6 [organisation]   Transl_elong_EF1B_B/D_CS [organisation]   Transl_elong_fac_EF1B_bsu/dsu [organisation]  
Related proteins : CluSTrP24534
Domain families : Pfam (Sanger)EF-1_beta_acid (PF10587)    EF1_GNE (PF00736)   
Domain families : Pfam (NCBI)pfam10587    pfam00736   
Domain families : Smart (EMBL)EF1_GNE (SM00888)  
DMDM Disease mutations1933
Blocks (Seattle)P24534
PDB (SRS)1B64   
PDB (PDBSum)1B64   
PDB (IMB)1B64   
PDB (RSDB)1B64   
Human Protein AtlasENSG00000114942 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP24534
HPRD02804
IPIIPI00178440   IPI00927696   IPI00927920   IPI00926585   IPI00924908   
Protein Interaction databases
DIP (DOE-UCLA)P24534
IntAct (EBI)P24534
FunCoupENSG00000114942
BioGRIDEEF1B2
InParanoidP24534
Interologous Interaction database P24534
IntegromeDBEEF1B2
STRING (EMBL)EEF1B2
Ontologies - Pathways
Ontology : AmiGOtranslation elongation factor activity  protein binding  cytosol  eukaryotic translation elongation factor 1 complex  translation  translational elongation  translational elongation  gene expression  cellular protein metabolic process  
Ontology : EGO-EBItranslation elongation factor activity  protein binding  cytosol  eukaryotic translation elongation factor 1 complex  translation  translational elongation  translational elongation  gene expression  cellular protein metabolic process  
Protein Interaction DatabaseEEF1B2
Wikipedia pathwaysEEF1B2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)EEF1B2
snp3D : Map Gene to Disease1933
SNP (GeneSNP Utah)EEF1B2
SNP : HGBaseEEF1B2
Genetic variants : HAPMAPEEF1B2
Exome VariantEEF1B2
1000_GenomesEEF1B2 
ICGC programENSG00000114942 
Somatic Mutations in Cancer : COSMICEEF1B2 
CONAN: Copy Number AnalysisEEF1B2 
Mutations and Diseases : HGMDEEF1B2
Genomic VariantsEEF1B2  EEF1B2 [DGVbeta]
dbVarEEF1B2
ClinVarEEF1B2
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM600655   
MedgenEEF1B2
GENETestsEEF1B2
Disease Genetic AssociationEEF1B2
Huge Navigator EEF1B2 [HugePedia]  EEF1B2 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneEEF1B2
Homology/Alignments : Family Browser (UCSC)EEF1B2
Phylogenetic Trees/Animal Genes : TreeFamEEF1B2
Chemical/Protein Interactions : CTD1933
Chemical/Pharm GKB GenePA27644
Clinical trialEEF1B2
Cancer Resource (Charite)ENSG00000114942
Other databases
Probes
Litterature
PubMed54 Pubmed reference(s) in Entrez
CoreMineEEF1B2
iHOPEEF1B2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 16:53:52 CEST 2014
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