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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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EEF1B2 (eukaryotic translation elongation factor 1 beta 2)

Identity

Other namesEEF1B
EEF1B1
EF1B
HGNC (Hugo) EEF1B2
LocusID (NCBI) 1933
Location 2q33.3
Location_base_pair Starts at 207024318 and ends at 207027653 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)EEF1B2   3208
Cards
Entrez_Gene (NCBI)EEF1B2  1933  eukaryotic translation elongation factor 1 beta 2
GeneCards (Weizmann)EEF1B2
Ensembl hg19 (Hinxton)ENSG00000114942 [Gene_View]  chr2:207024318-207027653 [Contig_View]  EEF1B2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000114942 [Gene_View]  chr2:207024318-207027653 [Contig_View]  EEF1B2 [Vega]
ICGC DataPortalENSG00000114942
cBioPortalEEF1B2
AceView (NCBI)EEF1B2
Genatlas (Paris)EEF1B2
WikiGenes1933
SOURCE (Princeton)EEF1B2
Genomic and cartography
GoldenPath hg19 (UCSC)EEF1B2  -     chr2:207024318-207027653 +  2q33.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)EEF1B2  -     2q33.3   [Description]    (hg38-Dec_2013)
EnsemblEEF1B2 - 2q33.3 [CytoView hg19]  EEF1B2 - 2q33.3 [CytoView hg38]
Mapping of homologs : NCBIEEF1B2 [Mapview hg19]  EEF1B2 [Mapview hg38]
OMIM600655   
Gene and transcription
Genbank (Entrez)AK291910 AK310096 BC000211 BC004931 BC029316
RefSeq transcript (Entrez)NM_001037663 NM_001959 NM_021121
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_009248 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)EEF1B2
Cluster EST : UnigeneHs.421608 [ NCBI ]
CGAP (NCI)Hs.421608
Alternative Splicing : Fast-db (Paris)GSHG0017136
Alternative Splicing GalleryENSG00000114942
Gene ExpressionEEF1B2 [ NCBI-GEO ]     EEF1B2 [ SEEK ]   EEF1B2 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP24534 (Uniprot)
NextProtP24534  [Medical]
With graphics : InterProP24534
Splice isoforms : SwissVarP24534 (Swissvar)
Domaine pattern : Prosite (Expaxy)EF1BD_1 (PS00824)    EF1BD_2 (PS00825)   
Domains : Interpro (EBI)EF-1_beta_acid_region_euk    Glutathione-S-Trfase_C-like    Transl_elong_EF1B/ribosomal_S6    Transl_elong_EF1B_B/D_CS    Transl_elong_fac_EF1B_bsu/dsu   
Related proteins : CluSTrP24534
Domain families : Pfam (Sanger)EF-1_beta_acid (PF10587)    EF1_GNE (PF00736)   
Domain families : Pfam (NCBI)pfam10587    pfam00736   
Domain families : Smart (EMBL)EF1_GNE (SM00888)  
DMDM Disease mutations1933
Blocks (Seattle)P24534
PDB (SRS)1B64   
PDB (PDBSum)1B64   
PDB (IMB)1B64   
PDB (RSDB)1B64   
Human Protein AtlasENSG00000114942
Peptide AtlasP24534
HPRD02804
IPIIPI00178440   IPI00927696   IPI00927920   IPI00926585   IPI00924908   
Protein Interaction databases
DIP (DOE-UCLA)P24534
IntAct (EBI)P24534
FunCoupENSG00000114942
BioGRIDEEF1B2
IntegromeDBEEF1B2
STRING (EMBL)EEF1B2
Ontologies - Pathways
QuickGOP24534
Ontology : AmiGOtranslation elongation factor activity  protein binding  nucleus  cytoplasm  endoplasmic reticulum  cytosol  eukaryotic translation elongation factor 1 complex  translation  translational elongation  translational elongation  gene expression  cellular protein metabolic process  
Ontology : EGO-EBItranslation elongation factor activity  protein binding  nucleus  cytoplasm  endoplasmic reticulum  cytosol  eukaryotic translation elongation factor 1 complex  translation  translational elongation  translational elongation  gene expression  cellular protein metabolic process  
Protein Interaction DatabaseEEF1B2
DoCM (Curated mutations)EEF1B2
Wikipedia pathwaysEEF1B2
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerEEF1B2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EEF1B2
dbVarEEF1B2
ClinVarEEF1B2
1000_GenomesEEF1B2 
Exome Variant ServerEEF1B2
SNP (GeneSNP Utah)EEF1B2
SNP : HGBaseEEF1B2
Genetic variants : HAPMAPEEF1B2
Genomic Variants (DGV)EEF1B2 [DGVbeta]
Mutations
ICGC Data PortalENSG00000114942 
Somatic Mutations in Cancer : COSMICEEF1B2 
CONAN: Copy Number AnalysisEEF1B2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)2:207024318-207027653
Mutations and Diseases : HGMDEEF1B2
OMIM600655   
MedgenEEF1B2
NextProtP24534 [Medical]
GENETestsEEF1B2
Disease Genetic AssociationEEF1B2
Huge Navigator EEF1B2 [HugePedia]  EEF1B2 [HugeCancerGEM]
snp3D : Map Gene to Disease1933
DGIdb (Drug Gene Interaction db)EEF1B2
General knowledge
Homologs : HomoloGeneEEF1B2
Homology/Alignments : Family Browser (UCSC)EEF1B2
Phylogenetic Trees/Animal Genes : TreeFamEEF1B2
Chemical/Protein Interactions : CTD1933
Chemical/Pharm GKB GenePA27644
Clinical trialEEF1B2
Cancer Resource (Charite)ENSG00000114942
Other databases
Probes
Litterature
PubMed65 Pubmed reference(s) in Entrez
CoreMineEEF1B2
GoPubMedEEF1B2
iHOPEEF1B2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 15:16:15 CET 2015

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