Atlas of Genetics and Cytogenetics in Oncology and Haematology

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EEF1DP3 (eukaryotic translation elongation factor 1 delta pseudogene 3)

Identity

Other alias-
HGNC (Hugo) EEF1DP3
LocusID (NCBI) 196549
Atlas_Id 62732
Location 13q13.1  [Link to chromosome band 13q13]
Location_base_pair Starts at 31950159 and ends at 31953428 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EEF1DP3 (13q13.1) / FRY (13q13.1)NCL (2q37.1) / EEF1DP3 (13q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(13;13)(q13;q13) EEF1DP3/FRY

External links

Nomenclature
HGNC (Hugo)EEF1DP3   30486
Cards
Entrez_Gene (NCBI)EEF1DP3  196549  eukaryotic translation elongation factor 1 delta pseudogene 3
Aliases
GeneCards (Weizmann)EEF1DP3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr13:31950159-31953428 [Contig_View]  EEF1DP3 [Vega]
TCGA cBioPortalEEF1DP3
AceView (NCBI)EEF1DP3
Genatlas (Paris)EEF1DP3
WikiGenes196549
SOURCE (Princeton)EEF1DP3
Genetics Home Reference (NIH)EEF1DP3
Genomic and cartography
GoldenPath hg38 (UCSC)EEF1DP3  -     chr13:31950159-31953428 +  13q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EEF1DP3  -     13q13.1   [Description]    (hg19-Feb_2009)
GoldenPathEEF1DP3 - 13q13.1 [CytoView hg19]  EEF1DP3 - 13q13.1 [CytoView hg38]
Mapping of homologs : NCBIEEF1DP3 [Mapview hg19]  EEF1DP3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL833768 BC021729 BC125059 BC125060 DA657873
RefSeq transcript (Entrez)NM_145293
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EEF1DP3
Cluster EST : UnigeneHs.507667 [ NCBI ]
CGAP (NCI)Hs.507667
Gene ExpressionEEF1DP3 [ NCBI-GEO ]   EEF1DP3 [ EBI - ARRAY_EXPRESS ]   EEF1DP3 [ SEEK ]   EEF1DP3 [ MEM ]
Gene Expression Viewer (FireBrowse)EEF1DP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)196549
GTEX Portal (Tissue expression)EEF1DP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ658K8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ658K8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ658K8
Splice isoforms : SwissVarQ658K8
PhosPhoSitePlusQ658K8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)EEF1DP3
DMDM Disease mutations196549
Blocks (Seattle)EEF1DP3
SuperfamilyQ658K8
Peptide AtlasQ658K8
HPRD08314
IPIIPI00103194   
Protein Interaction databases
DIP (DOE-UCLA)Q658K8
IntAct (EBI)Q658K8
BioGRIDEEF1DP3
STRING (EMBL)EEF1DP3
ZODIACEEF1DP3
Ontologies - Pathways
QuickGOQ658K8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkEEF1DP3
Atlas of Cancer Signalling NetworkEEF1DP3
Wikipedia pathwaysEEF1DP3
Orthology - Evolution
OrthoDB196549
Phylogenetic Trees/Animal Genes : TreeFamEEF1DP3
HOGENOMQ658K8
Homologs : HomoloGeneEEF1DP3
Homology/Alignments : Family Browser (UCSC)EEF1DP3
Gene fusions - Rearrangements
Fusion : QuiverEEF1DP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEEF1DP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EEF1DP3
dbVarEEF1DP3
ClinVarEEF1DP3
1000_GenomesEEF1DP3 
Exome Variant ServerEEF1DP3
Varsome BrowserEEF1DP3
Genetic variants : HAPMAP196549
Genomic Variants (DGV)EEF1DP3 [DGVbeta]
DECIPHEREEF1DP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEEF1DP3 
Mutations
ICGC Data PortalEEF1DP3 
TCGA Data PortalEEF1DP3 
Broad Tumor PortalEEF1DP3
OASIS PortalEEF1DP3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDEEF1DP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EEF1DP3
DgiDB (Drug Gene Interaction Database)EEF1DP3
DoCM (Curated mutations)EEF1DP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EEF1DP3 (select a term)
intoGenEEF1DP3
Cancer3DEEF1DP3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETEEF1DP3
MedgenEEF1DP3
Genetic Testing Registry EEF1DP3
NextProtQ658K8 [Medical]
TSGene196549
GENETestsEEF1DP3
Target ValidationEEF1DP3
Huge Navigator EEF1DP3 [HugePedia]
snp3D : Map Gene to Disease196549
BioCentury BCIQEEF1DP3
ClinGenEEF1DP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD196549
Clinical trialEEF1DP3
Miscellaneous
canSAR (ICR)EEF1DP3 (select the gene name)
DataMed IndexEEF1DP3
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEEF1DP3
EVEXEEF1DP3
GoPubMedEEF1DP3
iHOPEEF1DP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 7 17:16:19 CEST 2019
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