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EFCAB10 (EF-hand calcium binding domain 10)

Identity

Other alias-
HGNC (Hugo) EFCAB10
LocusID (NCBI) 100130771
Atlas_Id 62735
Location 7q22.3  [Link to chromosome band 7q22]
Location_base_pair Starts at 105565133 and ends at 105581529 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EFCAB10 (7q22.3) / RRP12 (10q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EFCAB10   34531
Cards
Entrez_Gene (NCBI)EFCAB10  100130771  EF-hand calcium binding domain 10
Aliases
GeneCards (Weizmann)EFCAB10
Ensembl hg19 (Hinxton)ENSG00000185055 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185055 [Gene_View]  chr7:105565133-105581529 [Contig_View]  EFCAB10 [Vega]
ICGC DataPortalENSG00000185055
TCGA cBioPortalEFCAB10
AceView (NCBI)EFCAB10
Genatlas (Paris)EFCAB10
WikiGenes100130771
SOURCE (Princeton)EFCAB10
Genetics Home Reference (NIH)EFCAB10
Genomic and cartography
GoldenPath hg38 (UCSC)EFCAB10  -     chr7:105565133-105581529 -  7q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EFCAB10  -     7q22.3   [Description]    (hg19-Feb_2009)
EnsemblEFCAB10 - 7q22.3 [CytoView hg19]  EFCAB10 - 7q22.3 [CytoView hg38]
Mapping of homologs : NCBIEFCAB10 [Mapview hg19]  EFCAB10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC062748 BC105284 DA101957
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EFCAB10
Cluster EST : UnigeneHs.719432 [ NCBI ]
CGAP (NCI)Hs.719432
Alternative Splicing GalleryENSG00000185055
Gene ExpressionEFCAB10 [ NCBI-GEO ]   EFCAB10 [ EBI - ARRAY_EXPRESS ]   EFCAB10 [ SEEK ]   EFCAB10 [ MEM ]
Gene Expression Viewer (FireBrowse)EFCAB10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100130771
GTEX Portal (Tissue expression)EFCAB10
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NFE3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NFE3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NFE3
Splice isoforms : SwissVarA6NFE3
PhosPhoSitePlusA6NFE3
Domaine pattern : Prosite (Expaxy)EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)cAMP_dep_PK_reg_su_I/II_a/b    EF-hand-dom_pair    EF_hand_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)EFCAB10
DMDM Disease mutations100130771
Blocks (Seattle)EFCAB10
SuperfamilyA6NFE3
Human Protein AtlasENSG00000185055
Peptide AtlasA6NFE3
IPIIPI00056475   IPI00946161   IPI00945131   IPI00944985   
Protein Interaction databases
DIP (DOE-UCLA)A6NFE3
IntAct (EBI)A6NFE3
FunCoupENSG00000185055
BioGRIDEFCAB10
STRING (EMBL)EFCAB10
ZODIACEFCAB10
Ontologies - Pathways
QuickGOA6NFE3
Ontology : AmiGOcalcium ion binding  
Ontology : EGO-EBIcalcium ion binding  
NDEx NetworkEFCAB10
Atlas of Cancer Signalling NetworkEFCAB10
Wikipedia pathwaysEFCAB10
Orthology - Evolution
OrthoDB100130771
GeneTree (enSembl)ENSG00000185055
Phylogenetic Trees/Animal Genes : TreeFamEFCAB10
HOVERGENA6NFE3
HOGENOMA6NFE3
Homologs : HomoloGeneEFCAB10
Homology/Alignments : Family Browser (UCSC)EFCAB10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEFCAB10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EFCAB10
dbVarEFCAB10
ClinVarEFCAB10
1000_GenomesEFCAB10 
Exome Variant ServerEFCAB10
ExAC (Exome Aggregation Consortium)EFCAB10 (select the gene name)
Genetic variants : HAPMAP100130771
Genomic Variants (DGV)EFCAB10 [DGVbeta]
DECIPHEREFCAB10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEFCAB10 
Mutations
ICGC Data PortalEFCAB10 
TCGA Data PortalEFCAB10 
Broad Tumor PortalEFCAB10
OASIS PortalEFCAB10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEFCAB10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEFCAB10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EFCAB10
DgiDB (Drug Gene Interaction Database)EFCAB10
DoCM (Curated mutations)EFCAB10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EFCAB10 (select a term)
intoGenEFCAB10
Cancer3DEFCAB10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenEFCAB10
Genetic Testing Registry EFCAB10
NextProtA6NFE3 [Medical]
TSGene100130771
GENETestsEFCAB10
Target ValidationEFCAB10
Huge Navigator EFCAB10 [HugePedia]
snp3D : Map Gene to Disease100130771
BioCentury BCIQEFCAB10
ClinGenEFCAB10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130771
Chemical/Pharm GKB GenePA164718892
Clinical trialEFCAB10
Miscellaneous
canSAR (ICR)EFCAB10 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEFCAB10
EVEXEFCAB10
GoPubMedEFCAB10
iHOPEFCAB10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:46:48 CEST 2017

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