Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

EFCAB14 (EF-hand calcium binding domain 14)

Identity

Alias_namesKIAA0494
KIAA0494
Other alias
HGNC (Hugo) EFCAB14
LocusID (NCBI) 9813
Atlas_Id 62739
Location 1p33  [Link to chromosome band 1p33]
Location_base_pair Starts at 46675159 and ends at 46719064 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EFCAB14 (1p33) / ATPAF1 (1p33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EFCAB14   29051
Cards
Entrez_Gene (NCBI)EFCAB14  9813  EF-hand calcium binding domain 14
AliasesKIAA0494
GeneCards (Weizmann)EFCAB14
Ensembl hg19 (Hinxton)ENSG00000159658 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159658 [Gene_View]  chr1:46675159-46719064 [Contig_View]  EFCAB14 [Vega]
ICGC DataPortalENSG00000159658
TCGA cBioPortalEFCAB14
AceView (NCBI)EFCAB14
Genatlas (Paris)EFCAB14
WikiGenes9813
SOURCE (Princeton)EFCAB14
Genetics Home Reference (NIH)EFCAB14
Genomic and cartography
GoldenPath hg38 (UCSC)EFCAB14  -     chr1:46675159-46719064 -  1p33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EFCAB14  -     1p33   [Description]    (hg19-Feb_2009)
EnsemblEFCAB14 - 1p33 [CytoView hg19]  EFCAB14 - 1p33 [CytoView hg38]
Mapping of homologs : NCBIEFCAB14 [Mapview hg19]  EFCAB14 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA974135 AB007963 AK001487 AK295722 BC002525
RefSeq transcript (Entrez)NM_014774
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EFCAB14
Cluster EST : UnigeneHs.707688 [ NCBI ]
CGAP (NCI)Hs.707688
Alternative Splicing GalleryENSG00000159658
Gene ExpressionEFCAB14 [ NCBI-GEO ]   EFCAB14 [ EBI - ARRAY_EXPRESS ]   EFCAB14 [ SEEK ]   EFCAB14 [ MEM ]
Gene Expression Viewer (FireBrowse)EFCAB14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9813
GTEX Portal (Tissue expression)EFCAB14
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75071   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75071  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75071
Splice isoforms : SwissVarO75071
PhosPhoSitePlusO75071
Domaine pattern : Prosite (Expaxy)EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_hand_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)EFCAB14
DMDM Disease mutations9813
Blocks (Seattle)EFCAB14
SuperfamilyO75071
Human Protein AtlasENSG00000159658
Peptide AtlasO75071
HPRD17191
IPIIPI00006130   IPI00922226   
Protein Interaction databases
DIP (DOE-UCLA)O75071
IntAct (EBI)O75071
FunCoupENSG00000159658
BioGRIDEFCAB14
STRING (EMBL)EFCAB14
ZODIACEFCAB14
Ontologies - Pathways
QuickGOO75071
Ontology : AmiGOcalcium ion binding  
Ontology : EGO-EBIcalcium ion binding  
NDEx NetworkEFCAB14
Atlas of Cancer Signalling NetworkEFCAB14
Wikipedia pathwaysEFCAB14
Orthology - Evolution
OrthoDB9813
GeneTree (enSembl)ENSG00000159658
Phylogenetic Trees/Animal Genes : TreeFamEFCAB14
HOVERGENO75071
HOGENOMO75071
Homologs : HomoloGeneEFCAB14
Homology/Alignments : Family Browser (UCSC)EFCAB14
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEFCAB14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EFCAB14
dbVarEFCAB14
ClinVarEFCAB14
1000_GenomesEFCAB14 
Exome Variant ServerEFCAB14
ExAC (Exome Aggregation Consortium)EFCAB14 (select the gene name)
Genetic variants : HAPMAP9813
Genomic Variants (DGV)EFCAB14 [DGVbeta]
DECIPHEREFCAB14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEFCAB14 
Mutations
ICGC Data PortalEFCAB14 
TCGA Data PortalEFCAB14 
Broad Tumor PortalEFCAB14
OASIS PortalEFCAB14 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDEFCAB14
BioMutasearch EFCAB14
DgiDB (Drug Gene Interaction Database)EFCAB14
DoCM (Curated mutations)EFCAB14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EFCAB14 (select a term)
intoGenEFCAB14
Cancer3DEFCAB14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenEFCAB14
Genetic Testing Registry EFCAB14
NextProtO75071 [Medical]
TSGene9813
GENETestsEFCAB14
Target ValidationEFCAB14
Huge Navigator EFCAB14 [HugePedia]
snp3D : Map Gene to Disease9813
BioCentury BCIQEFCAB14
ClinGenEFCAB14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9813
Chemical/Pharm GKB GenePA142671630
Clinical trialEFCAB14
Miscellaneous
canSAR (ICR)EFCAB14 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEFCAB14
EVEXEFCAB14
GoPubMedEFCAB14
iHOPEFCAB14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:14:06 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.