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EFCAB8 (EF-hand calcium binding domain 8)

Identity

Other alias-
HGNC (Hugo) EFCAB8
LocusID (NCBI) 388795
Atlas_Id 79254
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 32858923 and ends at 32961609 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EFCAB8   34532
Cards
Entrez_Gene (NCBI)EFCAB8  388795  EF-hand calcium binding domain 8
Aliases
GeneCards (Weizmann)EFCAB8
Ensembl hg19 (Hinxton)ENSG00000215529 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215529 [Gene_View]  chr20:32858923-32961609 [Contig_View]  EFCAB8 [Vega]
ICGC DataPortalENSG00000215529
TCGA cBioPortalEFCAB8
AceView (NCBI)EFCAB8
Genatlas (Paris)EFCAB8
WikiGenes388795
SOURCE (Princeton)EFCAB8
Genetics Home Reference (NIH)EFCAB8
Genomic and cartography
GoldenPath hg38 (UCSC)EFCAB8  -     chr20:32858923-32961609 +  20q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EFCAB8  -     20q11.21   [Description]    (hg19-Feb_2009)
EnsemblEFCAB8 - 20q11.21 [CytoView hg19]  EFCAB8 - 20q11.21 [CytoView hg38]
Mapping of homologs : NCBIEFCAB8 [Mapview hg19]  EFCAB8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001143967
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EFCAB8
Alternative Splicing GalleryENSG00000215529
Gene ExpressionEFCAB8 [ NCBI-GEO ]   EFCAB8 [ EBI - ARRAY_EXPRESS ]   EFCAB8 [ SEEK ]   EFCAB8 [ MEM ]
Gene Expression Viewer (FireBrowse)EFCAB8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388795
GTEX Portal (Tissue expression)EFCAB8
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MWE9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MWE9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MWE9
Splice isoforms : SwissVarA8MWE9
PhosPhoSitePlusA8MWE9
Domaine pattern : Prosite (Expaxy)EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_hand_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)EFCAB8
DMDM Disease mutations388795
Blocks (Seattle)EFCAB8
SuperfamilyA8MWE9
Human Protein AtlasENSG00000215529
Peptide AtlasA8MWE9
IPIIPI00921614   IPI00984496   IPI00916692   IPI00916191   
Protein Interaction databases
DIP (DOE-UCLA)A8MWE9
IntAct (EBI)A8MWE9
FunCoupENSG00000215529
BioGRIDEFCAB8
STRING (EMBL)EFCAB8
ZODIACEFCAB8
Ontologies - Pathways
QuickGOA8MWE9
Ontology : AmiGOcalcium ion binding  
Ontology : EGO-EBIcalcium ion binding  
NDEx NetworkEFCAB8
Atlas of Cancer Signalling NetworkEFCAB8
Wikipedia pathwaysEFCAB8
Orthology - Evolution
OrthoDB388795
GeneTree (enSembl)ENSG00000215529
Phylogenetic Trees/Animal Genes : TreeFamEFCAB8
HOVERGENA8MWE9
HOGENOMA8MWE9
Homologs : HomoloGeneEFCAB8
Homology/Alignments : Family Browser (UCSC)EFCAB8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEFCAB8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EFCAB8
dbVarEFCAB8
ClinVarEFCAB8
1000_GenomesEFCAB8 
Exome Variant ServerEFCAB8
ExAC (Exome Aggregation Consortium)EFCAB8 (select the gene name)
Genetic variants : HAPMAP388795
Genomic Variants (DGV)EFCAB8 [DGVbeta]
DECIPHEREFCAB8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEFCAB8 
Mutations
ICGC Data PortalEFCAB8 
TCGA Data PortalEFCAB8 
Broad Tumor PortalEFCAB8
OASIS PortalEFCAB8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEFCAB8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEFCAB8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EFCAB8
DgiDB (Drug Gene Interaction Database)EFCAB8
DoCM (Curated mutations)EFCAB8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EFCAB8 (select a term)
intoGenEFCAB8
Cancer3DEFCAB8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenEFCAB8
Genetic Testing Registry EFCAB8
NextProtA8MWE9 [Medical]
TSGene388795
GENETestsEFCAB8
Target ValidationEFCAB8
Huge Navigator EFCAB8 [HugePedia]
snp3D : Map Gene to Disease388795
BioCentury BCIQEFCAB8
ClinGenEFCAB8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388795
Chemical/Pharm GKB GenePA164718907
Clinical trialEFCAB8
Miscellaneous
canSAR (ICR)EFCAB8 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEFCAB8
EVEXEFCAB8
GoPubMedEFCAB8
iHOPEFCAB8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:06:54 CEST 2017

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