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EFCAB9 (EF-hand calcium binding domain 9)

Identity

Other alias-
HGNC (Hugo) EFCAB9
LocusID (NCBI) 285588
Atlas_Id 62745
Location 5q35.1  [Link to chromosome band 5q35]
Location_base_pair Starts at 172194172 and ends at 172203454 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EFCAB9   34530
Cards
Entrez_Gene (NCBI)EFCAB9  285588  EF-hand calcium binding domain 9
Aliases
GeneCards (Weizmann)EFCAB9
Ensembl hg19 (Hinxton)ENSG00000214360 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214360 [Gene_View]  chr5:172194172-172203454 [Contig_View]  EFCAB9 [Vega]
ICGC DataPortalENSG00000214360
TCGA cBioPortalEFCAB9
AceView (NCBI)EFCAB9
Genatlas (Paris)EFCAB9
WikiGenes285588
SOURCE (Princeton)EFCAB9
Genetics Home Reference (NIH)EFCAB9
Genomic and cartography
GoldenPath hg38 (UCSC)EFCAB9  -     chr5:172194172-172203454 +  5q35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EFCAB9  -     5q35.1   [Description]    (hg19-Feb_2009)
EnsemblEFCAB9 - 5q35.1 [CytoView hg19]  EFCAB9 - 5q35.1 [CytoView hg38]
Mapping of homologs : NCBIEFCAB9 [Mapview hg19]  EFCAB9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI024830 CN445899
RefSeq transcript (Entrez)NM_001171183
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EFCAB9
Cluster EST : UnigeneHs.716824 [ NCBI ]
CGAP (NCI)Hs.716824
Alternative Splicing GalleryENSG00000214360
Gene ExpressionEFCAB9 [ NCBI-GEO ]   EFCAB9 [ EBI - ARRAY_EXPRESS ]   EFCAB9 [ SEEK ]   EFCAB9 [ MEM ]
Gene Expression Viewer (FireBrowse)EFCAB9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285588
GTEX Portal (Tissue expression)EFCAB9
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MZ26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MZ26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MZ26
Splice isoforms : SwissVarA8MZ26
PhosPhoSitePlusA8MZ26
Domaine pattern : Prosite (Expaxy)EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_hand_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)EFCAB9
DMDM Disease mutations285588
Blocks (Seattle)EFCAB9
SuperfamilyA8MZ26
Human Protein AtlasENSG00000214360
Peptide AtlasA8MZ26
IPIIPI00874201   
Protein Interaction databases
DIP (DOE-UCLA)A8MZ26
IntAct (EBI)A8MZ26
FunCoupENSG00000214360
BioGRIDEFCAB9
STRING (EMBL)EFCAB9
ZODIACEFCAB9
Ontologies - Pathways
QuickGOA8MZ26
Ontology : AmiGOcalcium ion binding  
Ontology : EGO-EBIcalcium ion binding  
NDEx NetworkEFCAB9
Atlas of Cancer Signalling NetworkEFCAB9
Wikipedia pathwaysEFCAB9
Orthology - Evolution
OrthoDB285588
GeneTree (enSembl)ENSG00000214360
Phylogenetic Trees/Animal Genes : TreeFamEFCAB9
HOVERGENA8MZ26
HOGENOMA8MZ26
Homologs : HomoloGeneEFCAB9
Homology/Alignments : Family Browser (UCSC)EFCAB9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEFCAB9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EFCAB9
dbVarEFCAB9
ClinVarEFCAB9
1000_GenomesEFCAB9 
Exome Variant ServerEFCAB9
ExAC (Exome Aggregation Consortium)EFCAB9 (select the gene name)
Genetic variants : HAPMAP285588
Genomic Variants (DGV)EFCAB9 [DGVbeta]
DECIPHEREFCAB9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEFCAB9 
Mutations
ICGC Data PortalEFCAB9 
TCGA Data PortalEFCAB9 
Broad Tumor PortalEFCAB9
OASIS PortalEFCAB9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEFCAB9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEFCAB9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EFCAB9
DgiDB (Drug Gene Interaction Database)EFCAB9
DoCM (Curated mutations)EFCAB9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EFCAB9 (select a term)
intoGenEFCAB9
Cancer3DEFCAB9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenEFCAB9
Genetic Testing Registry EFCAB9
NextProtA8MZ26 [Medical]
TSGene285588
GENETestsEFCAB9
Target ValidationEFCAB9
Huge Navigator EFCAB9 [HugePedia]
snp3D : Map Gene to Disease285588
BioCentury BCIQEFCAB9
ClinGenEFCAB9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285588
Chemical/Pharm GKB GenePA164718963
Clinical trialEFCAB9
Miscellaneous
canSAR (ICR)EFCAB9 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEFCAB9
EVEXEFCAB9
GoPubMedEFCAB9
iHOPEFCAB9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:46:50 CEST 2017

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