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EFNB1 (ephrin-B1)

Identity

Other namesCFND
CFNS
EFB1
EFL3
EPLG2
Elk-L
LERK2
HGNC (Hugo) EFNB1
LocusID (NCBI) 1947
Location Xq13.1
Location_base_pair Starts at 68048840 and ends at 68062006 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)EFNB1   3226
Cards
Entrez_Gene (NCBI)EFNB1  1947  ephrin-B1
GeneCards (Weizmann)EFNB1
Ensembl (Hinxton)ENSG00000090776 [Gene_View]  chrX:68048840-68062006 [Contig_View]  EFNB1 [Vega]
ICGC DataPortalENSG00000090776
AceView (NCBI)EFNB1
Genatlas (Paris)EFNB1
WikiGenes1947
SOURCE (Princeton)NM_004429
Genomic and cartography
GoldenPath (UCSC)EFNB1  -  Xq13.1   chrX:68048840-68062006 +  Xq13.1   [Description]    (hg19-Feb_2009)
EnsemblEFNB1 - Xq13.1 [CytoView]
Mapping of homologs : NCBIEFNB1 [Mapview]
OMIM300035   304110   
Gene and transcription
Genbank (Entrez)BC016649 BC052979 BM972960 BU172498 CB132233
RefSeq transcript (Entrez)NM_004429
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_008887 NT_011651 NW_001842373 NW_004929443
Consensus coding sequences : CCDS (NCBI)EFNB1
Cluster EST : UnigeneHs.144700 [ NCBI ]
CGAP (NCI)Hs.144700
Alternative Splicing : Fast-db (Paris)GSHG0031591
Alternative Splicing GalleryENSG00000090776
Gene ExpressionEFNB1 [ NCBI-GEO ]     EFNB1 [ SEEK ]   EFNB1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP98172 (Uniprot)
NextProtP98172  [Medical]
With graphics : InterProP98172
Splice isoforms : SwissVarP98172 (Swissvar)
Domaine pattern : Prosite (Expaxy)EPHRIN_RBD_1 (PS01299)    EPHRIN_RBD_2 (PS51551)   
Domains : Interpro (EBI)Cupredoxin    Ephrin    Ephrin_CS   
Related proteins : CluSTrP98172
Domain families : Pfam (Sanger)Ephrin (PF00812)   
Domain families : Pfam (NCBI)pfam00812   
Domain structure : Prodom (Prabi Lyon)Ephrin (PD002533)   
DMDM Disease mutations1947
Blocks (Seattle)P98172
Human Protein AtlasENSG00000090776
Peptide AtlasP98172
HPRD02072
IPIIPI00024307   IPI00976219   
Protein Interaction databases
DIP (DOE-UCLA)P98172
IntAct (EBI)P98172
FunCoupENSG00000090776
BioGRIDEFNB1
IntegromeDBEFNB1
STRING (EMBL)EFNB1
Ontologies - Pathways
QuickGOP98172
Ontology : AmiGOneural crest cell migration  protein binding  nucleus  cytoplasm  plasma membrane  integral component of plasma membrane  cell adhesion  cell-cell signaling  axon guidance  embryonic pattern specification  positive regulation of T cell proliferation  membrane raft  synapse  ephrin receptor binding  ephrin receptor signaling pathway  extracellular vesicular exosome  
Ontology : EGO-EBIneural crest cell migration  protein binding  nucleus  cytoplasm  plasma membrane  integral component of plasma membrane  cell adhesion  cell-cell signaling  axon guidance  embryonic pattern specification  positive regulation of T cell proliferation  membrane raft  synapse  ephrin receptor binding  ephrin receptor signaling pathway  extracellular vesicular exosome  
Pathways : KEGGAxon guidance   
Protein Interaction DatabaseEFNB1
Wikipedia pathwaysEFNB1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)EFNB1
SNP (GeneSNP Utah)EFNB1
SNP : HGBaseEFNB1
Genetic variants : HAPMAPEFNB1
1000_GenomesEFNB1 
ICGC programENSG00000090776 
CONAN: Copy Number AnalysisEFNB1 
Somatic Mutations in Cancer : COSMICEFNB1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
DECIPHER (Syndromes)X:68048840-68062006
Mutations and Diseases : HGMDEFNB1
OMIM300035    304110   
MedgenEFNB1
GENETestsEFNB1
Disease Genetic AssociationEFNB1
Huge Navigator EFNB1 [HugePedia]  EFNB1 [HugeCancerGEM]
Genomic VariantsEFNB1  EFNB1 [DGVbeta]
Exome VariantEFNB1
dbVarEFNB1
ClinVarEFNB1
snp3D : Map Gene to Disease1947
General knowledge
Homologs : HomoloGeneEFNB1
Homology/Alignments : Family Browser (UCSC)EFNB1
Phylogenetic Trees/Animal Genes : TreeFamEFNB1
Chemical/Protein Interactions : CTD1947
Chemical/Pharm GKB GenePA27661
Clinical trialEFNB1
Cancer Resource (Charite)ENSG00000090776
Other databases
Probes
Litterature
PubMed72 Pubmed reference(s) in Entrez
CoreMineEFNB1
GoPubMedEFNB1
iHOPEFNB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 17:23:29 CET 2014

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