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EFR3B (EFR3 homolog B)

Identity

Alias_namesKIAA0953
KIAA0953
EFR3 homolog B (S. cerevisiae)
Alias_symbol (synonym)FLJ37871
Other alias
HGNC (Hugo) EFR3B
LocusID (NCBI) 22979
Atlas_Id 62752
Location 2p23.3  [Link to chromosome band 2p23]
Location_base_pair Starts at 25042463 and ends at 25159135 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EFR3B (2p23.3) / EFR3B (2p23.3)EFR3B (2p23.3) / MBP (18q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EFR3B   29155
Cards
Entrez_Gene (NCBI)EFR3B  22979  EFR3 homolog B
AliasesKIAA0953
GeneCards (Weizmann)EFR3B
Ensembl hg19 (Hinxton)ENSG00000084710 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000084710 [Gene_View]  chr2:25042463-25159135 [Contig_View]  EFR3B [Vega]
ICGC DataPortalENSG00000084710
TCGA cBioPortalEFR3B
AceView (NCBI)EFR3B
Genatlas (Paris)EFR3B
WikiGenes22979
SOURCE (Princeton)EFR3B
Genetics Home Reference (NIH)EFR3B
Genomic and cartography
GoldenPath hg38 (UCSC)EFR3B  -     chr2:25042463-25159135 +  2p23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EFR3B  -     2p23.3   [Description]    (hg19-Feb_2009)
EnsemblEFR3B - 2p23.3 [CytoView hg19]  EFR3B - 2p23.3 [CytoView hg38]
Mapping of homologs : NCBIEFR3B [Mapview hg19]  EFR3B [Mapview hg38]
OMIM616797   
Gene and transcription
Genbank (Entrez)AB023170 AF131834 AK095190 BC049384 DA241650
RefSeq transcript (Entrez)NM_001319099 NM_014971
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EFR3B
Cluster EST : UnigeneHs.4892 [ NCBI ]
CGAP (NCI)Hs.4892
Alternative Splicing GalleryENSG00000084710
Gene ExpressionEFR3B [ NCBI-GEO ]   EFR3B [ EBI - ARRAY_EXPRESS ]   EFR3B [ SEEK ]   EFR3B [ MEM ]
Gene Expression Viewer (FireBrowse)EFR3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22979
GTEX Portal (Tissue expression)EFR3B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2G0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2G0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2G0
Splice isoforms : SwissVarQ9Y2G0
PhosPhoSitePlusQ9Y2G0
Domains : Interpro (EBI)ARM-like    ARM-type_fold   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)EFR3B
DMDM Disease mutations22979
Blocks (Seattle)EFR3B
SuperfamilyQ9Y2G0
Human Protein AtlasENSG00000084710
Peptide AtlasQ9Y2G0
IPIIPI00896386   IPI00384600   IPI00877167   IPI00892551   IPI00892689   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2G0
IntAct (EBI)Q9Y2G0
FunCoupENSG00000084710
BioGRIDEFR3B
STRING (EMBL)EFR3B
ZODIACEFR3B
Ontologies - Pathways
QuickGOQ9Y2G0
Ontology : AmiGOprotein binding  cytosol  plasma membrane  phosphatidylinositol phosphorylation  establishment of protein localization to plasma membrane  
Ontology : EGO-EBIprotein binding  cytosol  plasma membrane  phosphatidylinositol phosphorylation  establishment of protein localization to plasma membrane  
NDEx NetworkEFR3B
Atlas of Cancer Signalling NetworkEFR3B
Wikipedia pathwaysEFR3B
Orthology - Evolution
OrthoDB22979
GeneTree (enSembl)ENSG00000084710
Phylogenetic Trees/Animal Genes : TreeFamEFR3B
HOVERGENQ9Y2G0
HOGENOMQ9Y2G0
Homologs : HomoloGeneEFR3B
Homology/Alignments : Family Browser (UCSC)EFR3B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEFR3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EFR3B
dbVarEFR3B
ClinVarEFR3B
1000_GenomesEFR3B 
Exome Variant ServerEFR3B
ExAC (Exome Aggregation Consortium)EFR3B (select the gene name)
Genetic variants : HAPMAP22979
Genomic Variants (DGV)EFR3B [DGVbeta]
DECIPHEREFR3B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEFR3B 
Mutations
ICGC Data PortalEFR3B 
TCGA Data PortalEFR3B 
Broad Tumor PortalEFR3B
OASIS PortalEFR3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEFR3B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEFR3B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EFR3B
DgiDB (Drug Gene Interaction Database)EFR3B
DoCM (Curated mutations)EFR3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EFR3B (select a term)
intoGenEFR3B
Cancer3DEFR3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616797   
Orphanet
MedgenEFR3B
Genetic Testing Registry EFR3B
NextProtQ9Y2G0 [Medical]
TSGene22979
GENETestsEFR3B
Target ValidationEFR3B
Huge Navigator EFR3B [HugePedia]
snp3D : Map Gene to Disease22979
BioCentury BCIQEFR3B
ClinGenEFR3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22979
Chemical/Pharm GKB GenePA162384473
Clinical trialEFR3B
Miscellaneous
canSAR (ICR)EFR3B (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEFR3B
EVEXEFR3B
GoPubMedEFR3B
iHOPEFR3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:46:51 CEST 2017

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