Atlas of Genetics and Cytogenetics in Oncology and Haematology

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EFS (embryonal Fyn-associated substrate)

Identity

Other namesCAS3
CASS3
EFS1
EFS2
HEFS
SIN
HGNC (Hugo) EFS
LocusID (NCBI) 10278
Location 14q11.2
Location_base_pair Starts at 23825611 and ends at 23834842 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)EFS   16898
Entrez_Gene (NCBI)EFS  10278  embryonal Fyn-associated substrate
Cards
GeneCards (Weizmann)EFS
Ensembl (Hinxton)ENSG00000100842 [Gene_View]  chr14:23825611-23834842 [Contig_View]  EFS [Vega]
AceView (NCBI)EFS
Genatlas (Paris)EFS
SOURCE (Stanford)NM_005864 NM_032459
Genomic and cartography
GoldenPath (UCSC)EFS  -  14q11.2   chr14:23825611-23834842 -  14q11.2   [Description]    (hg19-Feb_2009)
EnsemblEFS - 14q11.2 [CytoView]
Mapping of homologs : NCBIEFS [Mapview]
OMIM609906   
Gene and transcription
Genbank (Entrez)AB001466 AB001467 AI808817 AK295933 AK314221
RefSeq transcript (SRS)NM_005864 NM_032459
RefSeq transcript (Entrez)NM_005864 NM_032459
RefSeq genomic (SRS)AC_000146 NC_000014 NC_018925 NT_026437 NW_001838110 NW_004078079
RefSeq genomic (Entrez)AC_000146 NC_000014 NC_018925 NT_026437 NW_001838110 NW_004078079
Consensus coding sequences : CCDS (NCBI)EFS
Cluster EST : UnigeneHs.24587 [ SRS ] Hs.24587 [ NCBI ]
CGAP (NCI)Hs.24587
Alternative Splicing : Fast-db (Paris)GSHG0009248
Alternative Splicing GalleryENSG00000100842
Gene ExpressionEFS [ NCBI-GEO ]   EFS [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43281 (SRS) O43281 (Uniprot)
NextProtO43281
With graphics : InterProO43281
Splice isoforms : SwissVarO43281(Swissvar)
Domaine pattern : Prosite (SRS)SH3 (PS50002)   
Domaine pattern : Prosite (Expaxy)SH3 (PS50002)   
Domains : Interpro (SRS)CAS_DUF3513    SH3_domain   
Domains : Interpro (EBI)CAS_DUF3513    SH3_domain   
Related proteins : CluSTrO43281
Domain families : Pfam (SRS)DUF3513 (PF12026)    SH3_1 (PF00018)   
Domain families : Pfam (Sanger)DUF3513 (PF12026)    SH3_1 (PF00018)   
Domain families : Pfam (NCBI)pfam12026    pfam00018   
Domain families : Smart (EMBL)SH3 (SM00326)  
DMDM10278
Blocks (Seattle)O43281
Human Protein AtlasENSG00000100842
HPRD09932
IPIIPI00011652   IPI00219428   IPI00910340   
Protein Interaction databases
DIP (DOE-UCLA)O43281
IntAct (EBI)O43281
FunCoupENSG00000100842
REACTOMEEFS
Protein Interaction Database10278
BioGRIDEFS
InParanoidO43281
Interologous Interaction database O43281
IntegromeDBEFS
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)EFS
SNP (GeneSNP Utah)EFS
SNP : HGBaseEFS
Genetic variants : HAPMAPEFS
Somatic Mutations in Cancer : COSMICEFS 
CONAN: Copy Number AnalysisEFS 
Mutations and Diseases : HGMDEFS
OMIM609906   
GENETests609906   
Disease Genetic AssociationEFS
Huge Navigator EFS [HugePedia]  EFS [HugeCancerGEM]
Genomic VariantsEFS  EFS [DGVbeta]
snp3D : Map Gene to Disease10278
General knowledge
Homologs : HomoloGeneEFS
Homology/Alignments : Family Browser (UCSC)EFS
Phylogenetic Trees/Animal Genes : TreeFamEFS
Chemical/Protein Interactions : CTD10278
Chemical/Pharm GKB GenePA134887136
Clinical trialEFS
Cancer Resource (Charite)ENSG00000100842
Ontology : AmiGOcytoplasm  cell adhesion  SH3 domain binding  protein domain specific binding  intracellular signal transduction  
Ontology : EGO-EBIcytoplasm  cell adhesion  SH3 domain binding  protein domain specific binding  intracellular signal transduction  
Other databases
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
PubGeneEFS
iHOPEFS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:43:21 CEST 2013
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