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EGFEM1P (EGF like and EMI domain containing 1, pseudogene)

Identity

Alias_namesC3orf50
NCRNA00259
chromosome 3 open reading frame 50
non-protein coding RNA 259
EGF-like and EMI domain containing 1, pseudogene
Other alias
HGNC (Hugo) EGFEM1P
LocusID (NCBI) 93556
Atlas_Id 78564
Location 3q26.2  [Link to chromosome band 3q26]
Location_base_pair Starts at 168249522 and ends at 168830586 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EGFEM1P   25149
Cards
Entrez_Gene (NCBI)EGFEM1P  93556  EGF like and EMI domain containing 1, pseudogene
AliasesC3orf50; NCRNA00259
GeneCards (Weizmann)EGFEM1P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:168249522-168830586 [Contig_View]  EGFEM1P [Vega]
TCGA cBioPortalEGFEM1P
AceView (NCBI)EGFEM1P
Genatlas (Paris)EGFEM1P
WikiGenes93556
SOURCE (Princeton)EGFEM1P
Genetics Home Reference (NIH)EGFEM1P
Genomic and cartography
GoldenPath hg38 (UCSC)EGFEM1P  -     chr3:168249522-168830586 +  3q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EGFEM1P  -     3q26.2   [Description]    (hg19-Feb_2009)
EnsemblEGFEM1P - 3q26.2 [CytoView hg19]  EGFEM1P - 3q26.2 [CytoView hg38]
Mapping of homologs : NCBIEGFEM1P [Mapview hg19]  EGFEM1P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086185 BC011266 BC103698 BC104748 BC105689
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EGFEM1P
Cluster EST : UnigeneHs.478158 [ NCBI ]
CGAP (NCI)Hs.478158
Gene ExpressionEGFEM1P [ NCBI-GEO ]   EGFEM1P [ EBI - ARRAY_EXPRESS ]   EGFEM1P [ SEEK ]   EGFEM1P [ MEM ]
Gene Expression Viewer (FireBrowse)EGFEM1P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93556
GTEX Portal (Tissue expression)EGFEM1P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0D2K5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0D2K5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0D2K5
Splice isoforms : SwissVarQ0D2K5
PhosPhoSitePlusQ0D2K5
Domaine pattern : Prosite (Expaxy)EGF_1 (PS00022)    EGF_2 (PS01186)   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)EGFEM1P
DMDM Disease mutations93556
Blocks (Seattle)EGFEM1P
SuperfamilyQ0D2K5
Peptide AtlasQ0D2K5
IPIIPI00789271   
Protein Interaction databases
DIP (DOE-UCLA)Q0D2K5
IntAct (EBI)Q0D2K5
BioGRIDEGFEM1P
STRING (EMBL)EGFEM1P
ZODIACEGFEM1P
Ontologies - Pathways
QuickGOQ0D2K5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkEGFEM1P
Atlas of Cancer Signalling NetworkEGFEM1P
Wikipedia pathwaysEGFEM1P
Orthology - Evolution
OrthoDB93556
Phylogenetic Trees/Animal Genes : TreeFamEGFEM1P
HOVERGENQ0D2K5
HOGENOMQ0D2K5
Homologs : HomoloGeneEGFEM1P
Homology/Alignments : Family Browser (UCSC)EGFEM1P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEGFEM1P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EGFEM1P
dbVarEGFEM1P
ClinVarEGFEM1P
1000_GenomesEGFEM1P 
Exome Variant ServerEGFEM1P
ExAC (Exome Aggregation Consortium)EGFEM1P (select the gene name)
Genetic variants : HAPMAP93556
Genomic Variants (DGV)EGFEM1P [DGVbeta]
DECIPHEREGFEM1P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEGFEM1P 
Mutations
ICGC Data PortalEGFEM1P 
TCGA Data PortalEGFEM1P 
Broad Tumor PortalEGFEM1P
OASIS PortalEGFEM1P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDEGFEM1P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EGFEM1P
DgiDB (Drug Gene Interaction Database)EGFEM1P
DoCM (Curated mutations)EGFEM1P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EGFEM1P (select a term)
intoGenEGFEM1P
Cancer3DEGFEM1P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenEGFEM1P
Genetic Testing Registry EGFEM1P
NextProtQ0D2K5 [Medical]
TSGene93556
GENETestsEGFEM1P
Target ValidationEGFEM1P
Huge Navigator EGFEM1P [HugePedia]
snp3D : Map Gene to Disease93556
BioCentury BCIQEGFEM1P
ClinGenEGFEM1P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93556
Chemical/Pharm GKB GenePA165697922
Clinical trialEGFEM1P
Miscellaneous
canSAR (ICR)EGFEM1P (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEGFEM1P
EVEXEGFEM1P
GoPubMedEGFEM1P
iHOPEGFEM1P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:06:55 CEST 2017

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