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EGFL8 (EGF like domain multiple 8)

Identity

Alias_namesC6orf8
chromosome 6 open reading frame 8
EGF-like-domain, multiple 8
Alias_symbol (synonym)NG3
Other alias
HGNC (Hugo) EGFL8
LocusID (NCBI) 80864
Atlas_Id 43611
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 32164605 and ends at 32168285 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PPT2 (6p21.32) / EGFL8 (6p21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EGFL8   13944
Cards
Entrez_Gene (NCBI)EGFL8  80864  EGF like domain multiple 8
AliasesC6orf8; NG3
GeneCards (Weizmann)EGFL8
Ensembl hg19 (Hinxton)ENSG00000241404 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241404 [Gene_View]  chr6:32164605-32168285 [Contig_View]  EGFL8 [Vega]
ICGC DataPortalENSG00000241404
TCGA cBioPortalEGFL8
AceView (NCBI)EGFL8
Genatlas (Paris)EGFL8
WikiGenes80864
SOURCE (Princeton)EGFL8
Genetics Home Reference (NIH)EGFL8
Genomic and cartography
GoldenPath hg38 (UCSC)EGFL8  -     chr6:32164605-32168285 +  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)EGFL8  -     6p21.32   [Description]    (hg19-Feb_2009)
EnsemblEGFL8 - 6p21.32 [CytoView hg19]  EGFL8 - 6p21.32 [CytoView hg38]
Mapping of homologs : NCBIEGFL8 [Mapview hg19]  EGFL8 [Mapview hg38]
OMIM609897   
Gene and transcription
Genbank (Entrez)AB190520 AK126457 AK309657 AY358139 BC035574
RefSeq transcript (Entrez)NM_030652
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)EGFL8
Cluster EST : UnigeneHs.731888 [ NCBI ]
CGAP (NCI)Hs.731888
Alternative Splicing GalleryENSG00000241404
Gene ExpressionEGFL8 [ NCBI-GEO ]   EGFL8 [ EBI - ARRAY_EXPRESS ]   EGFL8 [ SEEK ]   EGFL8 [ MEM ]
Gene Expression Viewer (FireBrowse)EGFL8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80864
GTEX Portal (Tissue expression)EGFL8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99944   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99944  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99944
Splice isoforms : SwissVarQ99944
PhosPhoSitePlusQ99944
Domaine pattern : Prosite (Expaxy)ASX_HYDROXYL (PS00010)    EGF_1 (PS00022)    EGF_2 (PS01186)    EGF_3 (PS50026)    EGF_CA (PS01187)    EMI (PS51041)   
Domains : Interpro (EBI)EGF-like_Ca-bd_dom    EGF-like_CS    EGF-like_dom    EGF-type_Asp/Asn_hydroxyl_site    EGF_Ca-bd_CS    EMI_domain   
Domain families : Pfam (Sanger)EGF (PF00008)    EGF_CA (PF07645)    EMI (PF07546)   
Domain families : Pfam (NCBI)pfam00008    pfam07645    pfam07546   
Domain families : Smart (EMBL)EGF (SM00181)  EGF_CA (SM00179)  
Conserved Domain (NCBI)EGFL8
DMDM Disease mutations80864
Blocks (Seattle)EGFL8
SuperfamilyQ99944
Human Protein AtlasENSG00000241404
Peptide AtlasQ99944
HPRD16854
IPIIPI00012710   IPI00641019   IPI00969634   IPI00853159   
Protein Interaction databases
DIP (DOE-UCLA)Q99944
IntAct (EBI)Q99944
FunCoupENSG00000241404
BioGRIDEGFL8
STRING (EMBL)EGFL8
ZODIACEGFL8
Ontologies - Pathways
QuickGOQ99944
Ontology : AmiGOin utero embryonic development  calcium ion binding  extracellular region  
Ontology : EGO-EBIin utero embryonic development  calcium ion binding  extracellular region  
NDEx NetworkEGFL8
Atlas of Cancer Signalling NetworkEGFL8
Wikipedia pathwaysEGFL8
Orthology - Evolution
OrthoDB80864
GeneTree (enSembl)ENSG00000241404
Phylogenetic Trees/Animal Genes : TreeFamEGFL8
HOVERGENQ99944
HOGENOMQ99944
Homologs : HomoloGeneEGFL8
Homology/Alignments : Family Browser (UCSC)EGFL8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEGFL8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EGFL8
dbVarEGFL8
ClinVarEGFL8
1000_GenomesEGFL8 
Exome Variant ServerEGFL8
ExAC (Exome Aggregation Consortium)EGFL8 (select the gene name)
Genetic variants : HAPMAP80864
Genomic Variants (DGV)EGFL8 [DGVbeta]
DECIPHEREGFL8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisEGFL8 
Mutations
ICGC Data PortalEGFL8 
TCGA Data PortalEGFL8 
Broad Tumor PortalEGFL8
OASIS PortalEGFL8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEGFL8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEGFL8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EGFL8
DgiDB (Drug Gene Interaction Database)EGFL8
DoCM (Curated mutations)EGFL8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EGFL8 (select a term)
intoGenEGFL8
Cancer3DEGFL8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609897   
Orphanet
MedgenEGFL8
Genetic Testing Registry EGFL8
NextProtQ99944 [Medical]
TSGene80864
GENETestsEGFL8
Target ValidationEGFL8
Huge Navigator EGFL8 [HugePedia]
snp3D : Map Gene to Disease80864
BioCentury BCIQEGFL8
ClinGenEGFL8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80864
Chemical/Pharm GKB GenePA38372
Clinical trialEGFL8
Miscellaneous
canSAR (ICR)EGFL8 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEGFL8
EVEXEGFL8
GoPubMedEGFL8
iHOPEGFL8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:32:14 CEST 2017

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