Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

EGR4 (early growth response 4)

Identity

Alias_symbol (synonym)NGFI-C
PAT133
Other aliasNGFIC
HGNC (Hugo) EGR4
LocusID (NCBI) 1961
Atlas_Id 56309
Location 2p13.1  [Link to chromosome band 2p13]
Location_base_pair Starts at 73518057 and ends at 73520829 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EGR4   3241
Cards
Entrez_Gene (NCBI)EGR4  1961  early growth response 4
AliasesNGFI-C; NGFIC; PAT133
GeneCards (Weizmann)EGR4
Ensembl hg19 (Hinxton)ENSG00000135625 [Gene_View]  chr2:73518057-73520829 [Contig_View]  EGR4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000135625 [Gene_View]  chr2:73518057-73520829 [Contig_View]  EGR4 [Vega]
ICGC DataPortalENSG00000135625
TCGA cBioPortalEGR4
AceView (NCBI)EGR4
Genatlas (Paris)EGR4
WikiGenes1961
SOURCE (Princeton)EGR4
Genetics Home Reference (NIH)EGR4
Genomic and cartography
GoldenPath hg19 (UCSC)EGR4  -     chr2:73518057-73520829 -  2p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)EGR4  -     2p13.1   [Description]    (hg38-Dec_2013)
EnsemblEGR4 - 2p13.1 [CytoView hg19]  EGR4 - 2p13.1 [CytoView hg38]
Mapping of homologs : NCBIEGR4 [Mapview hg19]  EGR4 [Mapview hg38]
OMIM128992   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001965
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)EGR4
Cluster EST : UnigeneHs.3052 [ NCBI ]
CGAP (NCI)Hs.3052
Alternative Splicing GalleryENSG00000135625
Gene ExpressionEGR4 [ NCBI-GEO ]   EGR4 [ EBI - ARRAY_EXPRESS ]   EGR4 [ SEEK ]   EGR4 [ MEM ]
Gene Expression Viewer (FireBrowse)EGR4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1961
GTEX Portal (Tissue expression)EGR4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ05215   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ05215  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ05215
Splice isoforms : SwissVarQ05215
PhosPhoSitePlusQ05215
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)EGR4
DMDM Disease mutations1961
Blocks (Seattle)EGR4
SuperfamilyQ05215
Human Protein AtlasENSG00000135625
Peptide AtlasQ05215
HPRD00550
IPIIPI00289101   
Protein Interaction databases
DIP (DOE-UCLA)Q05215
IntAct (EBI)Q05215
FunCoupENSG00000135625
BioGRIDEGR4
STRING (EMBL)EGR4
ZODIACEGR4
Ontologies - Pathways
QuickGOQ05215
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  positive regulation of cell proliferation  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  positive regulation of cell proliferation  metal ion binding  
NDEx NetworkEGR4
Atlas of Cancer Signalling NetworkEGR4
Wikipedia pathwaysEGR4
Orthology - Evolution
OrthoDB1961
GeneTree (enSembl)ENSG00000135625
Phylogenetic Trees/Animal Genes : TreeFamEGR4
HOVERGENQ05215
HOGENOMQ05215
Homologs : HomoloGeneEGR4
Homology/Alignments : Family Browser (UCSC)EGR4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEGR4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EGR4
dbVarEGR4
ClinVarEGR4
1000_GenomesEGR4 
Exome Variant ServerEGR4
ExAC (Exome Aggregation Consortium)EGR4 (select the gene name)
Genetic variants : HAPMAP1961
Genomic Variants (DGV)EGR4 [DGVbeta]
DECIPHER (Syndromes)2:73518057-73520829  ENSG00000135625
CONAN: Copy Number AnalysisEGR4 
Mutations
ICGC Data PortalEGR4 
TCGA Data PortalEGR4 
Broad Tumor PortalEGR4
OASIS PortalEGR4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEGR4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEGR4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EGR4
DgiDB (Drug Gene Interaction Database)EGR4
DoCM (Curated mutations)EGR4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EGR4 (select a term)
intoGenEGR4
Cancer3DEGR4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM128992   
Orphanet
MedgenEGR4
Genetic Testing Registry EGR4
NextProtQ05215 [Medical]
TSGene1961
GENETestsEGR4
Huge Navigator EGR4 [HugePedia]
snp3D : Map Gene to Disease1961
BioCentury BCIQEGR4
ClinGenEGR4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1961
Chemical/Pharm GKB GenePA27676
Clinical trialEGR4
Miscellaneous
canSAR (ICR)EGR4 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEGR4
EVEXEGR4
GoPubMedEGR4
iHOPEGR4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:04:23 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.