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EID3 (EP300 interacting inhibitor of differentiation 3)

Identity

Alias_symbol (synonym)FLJ25832
NSMCE4B
NSE4B
Other aliasNS4EB
HGNC (Hugo) EID3
LocusID (NCBI) 493861
Atlas_Id 52761
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 104697510 and ends at 104698982 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)EID3   32961
Cards
Entrez_Gene (NCBI)EID3  493861  EP300 interacting inhibitor of differentiation 3
AliasesNS4EB; NSE4B; NSMCE4B
GeneCards (Weizmann)EID3
Ensembl hg19 (Hinxton)ENSG00000255150 [Gene_View]  chr12:104697510-104698982 [Contig_View]  EID3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000255150 [Gene_View]  chr12:104697510-104698982 [Contig_View]  EID3 [Vega]
ICGC DataPortalENSG00000255150
TCGA cBioPortalEID3
AceView (NCBI)EID3
Genatlas (Paris)EID3
WikiGenes493861
SOURCE (Princeton)EID3
Genetics Home Reference (NIH)EID3
Genomic and cartography
GoldenPath hg19 (UCSC)EID3  -     chr12:104697510-104698982 +  12q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)EID3  -     12q23.3   [Description]    (hg38-Dec_2013)
EnsemblEID3 - 12q23.3 [CytoView hg19]  EID3 - 12q23.3 [CytoView hg38]
Mapping of homologs : NCBIEID3 [Mapview hg19]  EID3 [Mapview hg38]
OMIM612986   
Gene and transcription
Genbank (Entrez)AK098698 BC027612 BI461575 HM005376
RefSeq transcript (Entrez)NM_001008394
RefSeq genomic (Entrez)NC_000012 NC_018923 NG_029392 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)EID3
Cluster EST : UnigeneHs.659857 [ NCBI ]
CGAP (NCI)Hs.659857
Alternative Splicing GalleryENSG00000255150
Gene ExpressionEID3 [ NCBI-GEO ]   EID3 [ EBI - ARRAY_EXPRESS ]   EID3 [ SEEK ]   EID3 [ MEM ]
Gene Expression Viewer (FireBrowse)EID3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)493861
GTEX Portal (Tissue expression)EID3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N140   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N140  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N140
Splice isoforms : SwissVarQ8N140
PhosPhoSitePlusQ8N140
Domains : Interpro (EBI)Nse4/EID    Nse4_C    Nse4_Nse3-bd   
Domain families : Pfam (Sanger)Nse4-Nse3_bdg (PF15412)    Nse4_C (PF08743)   
Domain families : Pfam (NCBI)pfam15412    pfam08743   
Conserved Domain (NCBI)EID3
DMDM Disease mutations493861
Blocks (Seattle)EID3
SuperfamilyQ8N140
Human Protein AtlasENSG00000255150
Peptide AtlasQ8N140
HPRD17415
IPIIPI00383858   
Protein Interaction databases
DIP (DOE-UCLA)Q8N140
IntAct (EBI)Q8N140
FunCoupENSG00000255150
BioGRIDEID3
STRING (EMBL)EID3
ZODIACEID3
Ontologies - Pathways
QuickGOQ8N140
Ontology : AmiGOchromosome, telomeric region  protein binding  nucleoplasm  cytoplasm  DNA repair  DNA recombination  transcription, DNA-templated  regulation of transcription, DNA-templated  protein sumoylation  Smc5-Smc6 complex  identical protein binding  
Ontology : EGO-EBIchromosome, telomeric region  protein binding  nucleoplasm  cytoplasm  DNA repair  DNA recombination  transcription, DNA-templated  regulation of transcription, DNA-templated  protein sumoylation  Smc5-Smc6 complex  identical protein binding  
NDEx NetworkEID3
Atlas of Cancer Signalling NetworkEID3
Wikipedia pathwaysEID3
Orthology - Evolution
OrthoDB493861
GeneTree (enSembl)ENSG00000255150
Phylogenetic Trees/Animal Genes : TreeFamEID3
HOVERGENQ8N140
HOGENOMQ8N140
Homologs : HomoloGeneEID3
Homology/Alignments : Family Browser (UCSC)EID3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerEID3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)EID3
dbVarEID3
ClinVarEID3
1000_GenomesEID3 
Exome Variant ServerEID3
ExAC (Exome Aggregation Consortium)EID3 (select the gene name)
Genetic variants : HAPMAP493861
Genomic Variants (DGV)EID3 [DGVbeta]
DECIPHER (Syndromes)12:104697510-104698982  ENSG00000255150
CONAN: Copy Number AnalysisEID3 
Mutations
ICGC Data PortalEID3 
TCGA Data PortalEID3 
Broad Tumor PortalEID3
OASIS PortalEID3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICEID3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDEID3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch EID3
DgiDB (Drug Gene Interaction Database)EID3
DoCM (Curated mutations)EID3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)EID3 (select a term)
intoGenEID3
Cancer3DEID3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612986   
Orphanet
MedgenEID3
Genetic Testing Registry EID3
NextProtQ8N140 [Medical]
TSGene493861
GENETestsEID3
Huge Navigator EID3 [HugePedia]
snp3D : Map Gene to Disease493861
BioCentury BCIQEID3
ClinGenEID3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD493861
Chemical/Pharm GKB GenePA162384552
Clinical trialEID3
Miscellaneous
canSAR (ICR)EID3 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineEID3
EVEXEID3
GoPubMedEID3
iHOPEID3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:04:25 CET 2017

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